NCBI: Difference between revisions

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{{Pagetop}}
[[Category:Databases]]
[[Category:IECA Portal]]
<protect><!--box uid=63ce1649aab8b3180235b0af7618f667.1707.F4a24b0aa1be37-->
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*
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
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{| {{Prettytable}} width='30%' align="right"  id="F4a24b0aa1be37"  class=" tableEdit Database_table" 


'''NCBI'''
'''You can help [[EcoliWiki]] by editing the content of this page.  For information about obtaining editing privileges, see [[E._coli_Wiki:Membership]]''' 
[[Category:Databases]]
{|{{Prettytable}} width='30%' align = 'right'
|- align='center' bgcolor = '#ddddff'
|  colspan = '2' | '''{{PAGENAME}}'''
|-
|-
| width='30%' | Who:
!align=left {{table heading style}} |Link/URL:
| ''proprietor''
||
http://www.ncbi.nlm.nih.gov/
|-
|-
| width='30%' | What:
!align=left {{table heading style}} |What:
| ''short description''
||
National Center for Biotechnology Information
|-
|-
| Where:
!align=left {{table heading style}} |Who:
| [http://www.ncbi.nlm.nih.gov/  {{PAGENAME}}]
||
National Library of Medicine, National Institutes of Health
|-
|-
| Updates
!align=left {{table heading style}} |Updates:
|
||
 
|-
|-
| Upcoming events
!align=left {{table heading style}} |Upcoming events:
| ''link to event calendar, if applicable''
||
 
|-
|-
| Web Services
!align=left {{table heading style}} |Web Services:
||
[http://eutils.ncbi.nlm.nih.gov/corehtml/query/static/eutils_help.html E-Utils]
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.1707.F4a24b0aa1be37&page=1707&pagename={{FULLPAGENAMEE}}&type=1&template=Database_table edit table]</span> ||
|}
<!--box uid=63ce1649aab8b3180235b0af7618f667.1707.F4a24b0aa1be37--></protect>
 
==About {{PAGENAME}}==
[http://www.ncbi.nlm.nih.gov/  {{PAGENAME}}] is the National Center for Biotechnology Information at the National Libraries of Medicine at the NIH.
 
==Content==
We have separate EcoliWiki pages for several parts of NCBI, including
* [[Clusters_of_Orthologous_Groups_(COGs)]]
* [[Conserved Domain Database (CDD)]]
* [[Gene Expression Omnibus (GEO)]]
* [[NCBI Short Read Archive]]
 
==Using {{PAGENAME}}==
===Browsing===
===Searching===
Searching across databases can be done using [http://www.ncbi.nlm.nih.gov/sites/gquery Entrez].  Alternatively, use the pull-down menu to specify searching within a specific database.
NCBI Entrez Protein: query by protein_id (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&cmd=Retrieve&list_uids=1788157&dopt=GenPept) <br>
NCBI PubMed: query by gene name OR b# AND Escherichia coli (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Search&db=PubMed&term=%28edd+OR+b1851%29+AND+escherichia+coli&tool=fuzzy&ot=%28edd+OR+b1851%29+AND+%27Escherichia+coli%27%29) <br>
NCBI Entrez Gene: query by gene_id (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=retrieve&dopt=graphics&list_uids=946362)<br>
NCBI Entrez Genome: query by gene name (http://www.ncbi.nlm.nih.gov/genomes/altvik.cgi?gi=115&db=g&gene=edd)
 
===Usage examples===
''Add links to additional pages describing success stories here.''
 
==Other sites with related content==
==Technology==
===Web Services/API===
[http://eutils.ncbi.nlm.nih.gov/corehtml/query/static/eutils_help.html NCBI E-Utils] web services can be used with Entrez databases
<protect><!--box uid=63ce1649aab8b3180235b0af7618f667.1707.Z4a24b1963ade6-->
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*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*
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{|  id="Z4a24b1963ade6"  class=" tableEdit " 
|-
!|Entrez Database!!Primary ID!!E-Utility Database Name!!Example query
|-
|
|
3D Domains
|
3D SDI
|
domains
|
|-
|
Domains
|
PSSM-ID
|
cdd
|
|-
|
Genome
|
Genome ID
|
genome
|
|-
|
Nucleotide
|
GI number
|
nucleotide
|
|-
|
OMIM
|
MIM number
|
omim
|
|-
|
PopSet
|
Popset ID
|
popset
|
|-
|
Protein
|
GI number
|
protein
|
|-
|
ProbeSet
|
GEO ID
|
geo
|
|-
|
PubMed
|
PMID
|
pubmed
|
|-
|
Structure
|
MMDB ID
|
structure
|
|-
|
SNP
|
SNP ID
|
snp
|
|-
|
Taxonomy
|
TAXID
|
taxonomy
|
|-
|
UniGene
|
UniGene ID
|
unigene
|
|-
|
UniSTS
|
UniSTS ID
|
unists
|
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.1707.Z4a24b1963ade6&page=1707&pagename={{FULLPAGENAMEE}}&type=0&template= edit table]</span> || || ||
|}
|}
=About {{PAGENAME}}=
<!--box uid=63ce1649aab8b3180235b0af7618f667.1707.Z4a24b1963ade6--></protect>
''Add general information here''
 
[http://www.ncbi.nlm.nih.gov/ {{PAGENAME}}] is...
==Discussion==
=Content=
 
=Using {{PAGENAME}}=
==Browsing==
==Searching==
==Usage examples==
''Add links to additional pages describing success stories here.''


=Other sites with related content=
==References==
=Technology=
{{BacktoTop}}
==Web Services/API==
{{RefHelp}}
=Discussion=
<references />
==Trackbacks==
[[Trackbacks|''What are trackbacks?'']]  ''This feature is not yet functional''


=References=
==External Links==
=External Links=
[http://www.ncbi.nlm.nih.gov/  {{PAGENAME}}]
[http://www.ncbi.nlm.nih.gov/  {{PAGENAME}}]
==Discussion of {{PAGENAME}} on other websites==
===Discussion of {{PAGENAME}} on other websites===

Latest revision as of 00:11, 23 May 2010

You can help EcoliWiki by editing the content of this page. For information about becoming a registered user and obtaining editing privileges, see Help:Accounts.

Link/URL:

http://www.ncbi.nlm.nih.gov/

What:

National Center for Biotechnology Information

Who:

National Library of Medicine, National Institutes of Health

Updates:
Upcoming events:
Web Services:

E-Utils

edit table


About NCBI

NCBI is the National Center for Biotechnology Information at the National Libraries of Medicine at the NIH.

Content

We have separate EcoliWiki pages for several parts of NCBI, including

Using NCBI

Browsing

Searching

Searching across databases can be done using Entrez. Alternatively, use the pull-down menu to specify searching within a specific database. NCBI Entrez Protein: query by protein_id (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein&cmd=Retrieve&list_uids=1788157&dopt=GenPept)
NCBI PubMed: query by gene name OR b# AND Escherichia coli (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Search&db=PubMed&term=%28edd+OR+b1851%29+AND+escherichia+coli&tool=fuzzy&ot=%28edd+OR+b1851%29+AND+%27Escherichia+coli%27%29)
NCBI Entrez Gene: query by gene_id (http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=retrieve&dopt=graphics&list_uids=946362)
NCBI Entrez Genome: query by gene name (http://www.ncbi.nlm.nih.gov/genomes/altvik.cgi?gi=115&db=g&gene=edd)

Usage examples

Add links to additional pages describing success stories here.

Other sites with related content

Technology

Web Services/API

NCBI E-Utils web services can be used with Entrez databases

Entrez Database Primary ID E-Utility Database Name Example query

3D Domains

3D SDI

domains

Domains

PSSM-ID

cdd

Genome

Genome ID

genome

Nucleotide

GI number

nucleotide

OMIM

MIM number

omim

PopSet

Popset ID

popset

Protein

GI number

protein

ProbeSet

GEO ID

geo

PubMed

PMID

pubmed

Structure

MMDB ID

structure

SNP

SNP ID

snp

Taxonomy

TAXID

taxonomy

UniGene

UniGene ID

unigene

UniSTS

UniSTS ID

unists


edit table


Discussion

References

[back to top]


See Help:References for how to manage references in EcoliWiki.


External Links

NCBI

Discussion of NCBI on other websites

Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=NCBI&oldid=1094761"