phnF:Quickview: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older edit
imported>WikiEntryBot
Automated import of articles
touch
 
(15 intermediate revisions by 3 users not shown)
Line 17: Line 17:
|}
|}
</noinclude>
</noinclude>
<!--box uid=421aa90e079fa326b6494f812ad13e79.9952.O46a9a2fcea646-->
<protect><!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.9952.X49b01fc7b7d8d-->
<!--
<!--
******************************************************************************************
******************************************************************************************
*
*  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*
*  
****************************************************************************************** -->
****************************************************************************************** -->
{|{{Prettytable}}
{|   id="X49b01fc7b7d8d"  class=" tableEdit New_Quickview_Table" 
 
|-
|-
!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
|
||
[[phnF:Gene|''phnF]]'' (synonyms: ''ECK4095, b4102, JW4063'')<ref name='LIB:Riley_2006'/>
''phnF''
|-
|-
!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
|
||
[[phnF:Gene_Product(s)|PhnF product]]<ref name='LIB:Riley_2006'/>: predicted DNA-binding transcriptional regulator of phosphonate uptake and biodegradation product, B4102 product
''ECK4095, b4102, JW4063''<ref name='LIB:Riley_2006'/>, JW4063''
|-
|-
!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
|
||
PhnF transcriptional regulator<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
PhnF transcriptional regulator<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


Phosphonate utilization, probable regulatory gene<ref name='LIB:EcoGene'/>
|-
!align=left {{table_heading_style}} |Product Synonyms(s)
||
''predicted DNA-binding transcriptional regulator of phosphonate uptake and biodegradation<ref name='LIB:Riley_2006'/>, B4102<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PhnF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK4095, JW4063, b4102''
|-
!align=left {{table_heading_style}} |Function from GO
||
<GO_nr />
|-
|-
!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
|
||


|-
|-
!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
|
||
transcription unit(s): [[:Category:Txn_unit:phnCDEEFGHIJKLMNOP|phnCDEEFGHIJKLMNOP]]<ref name='LIB:EcoCyc10.6'/>, OP00283, phnCDE-w4011-phnFGHIJKLMNOP, phnCDE-w4011-phnFGHIJKLMNOPQ, phnCDE-b4103-phnFGHIJKLMNOP  
transcription unit(s): [[:Category:Txn_unit:phnCDEEFGHIJKLMNOP|phnCDEEFGHIJKLMNOP]]<ref name='LIB:EcoCyc10.6'/>, OP00283, phnCDE-w4011-phnFGHIJKLMNOP, phnCDE-w4011-phnFGHIJKLMNOPQ, phnCDE-b4103-phnFGHIJKLMNOP  
|-
|-
!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
|
||


|-
|-
|colspan='2'|[{{SERVER}}/colipedia/index.php?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.9952.O46a9a2fcea646&page=9952&pagename={{FULLPAGENAMEE}} edit table]
!align=left {{table_heading_style}} |Quick Links
||
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=phnF&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10715]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120000707&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=phnF&loc=MG1655%3A4320445..4319720,W3110%3A4327100..4326375,REL606%3A4301244..4300519,DH10B%3A4420807..4420082,BW2952%3A4258455..4259180]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4258455&end=4259180&gene=phnF&aa=mhlsthptsyptryqeiaakleqelrqhyrcgdylpaeqqlaarfevnrhtlrraidqlvekgwvqrrqgvgvlvlmrpfdyplnaqarfsqnlldqgshptsekllsvlrpasghvadalgitegenvihlrtlrrvngvalclidhyfadltlwptlqrfdsgslhdflreqtgialrrsqtrisarraqakecqrleipnmspllcvrtlnhrdgesspaeysvsltradmieftmeh]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=phnF+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=phnF]]&nbsp;&nbsp;
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.9952.X49b01fc7b7d8d&page=9952&pagename={{FULLPAGENAMEE}}&type=1&template=New_Quickview_Table edit table]</span> ||
|}
|}
<!--box uid=421aa90e079fa326b6494f812ad13e79.9952.O46a9a2fcea646-->
<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.9952.X49b01fc7b7d8d--></protect>
{{Quickview_table_help}}
{{Quickview_table_help}}
<protect><!--Quickview_notes--></protect>
<protect><!--Quickview_notes--></protect>
===Notes===
===Notes===
{{BacktoTop}}
{{BacktoTop}}
GntR family. Pho regulon. Phosphonate utilization is cryptic in K-12.<ref name='LIB:EcoGene'/>




Line 63: Line 81:
==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
 
<references/>
<references/>
</noinclude>
</noinclude>

Latest revision as of 21:54, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

phnF

Gene Synonym(s)

ECK4095, b4102, JW4063[1], JW4063

Product Desc.

PhnF transcriptional regulator[2][3]

Phosphonate utilization, probable regulatory gene[4]

Product Synonyms(s)

predicted DNA-binding transcriptional regulator of phosphonate uptake and biodegradation[1], B4102[2][1], PhnF[2][1] , ECK4095, JW4063, b4102

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): phnCDEEFGHIJKLMNOP[2], OP00283, phnCDE-w4011-phnFGHIJKLMNOP, phnCDE-w4011-phnFGHIJKLMNOPQ, phnCDE-b4103-phnFGHIJKLMNOP

Regulation/Activity
Quick Links



        

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


GntR family. Pho regulon. Phosphonate utilization is cryptic in K-12.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=phnF:Quickview&oldid=1398108"