yidC:Quickview: Difference between revisions

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{|   id="D49b0328de9388"  class=" tableEdit New_Quickview_Table" 
 
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[yidC:Gene|''yidC]]'' (synonyms: ''ECK3698, b3705, JW3683'')<ref name='LIB:Riley_2006'/>
''yidC''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[yidC:Gene_Product(s)|YidC product]]<ref name='LIB:Riley_2006'/>: cytoplasmic insertase into membrane protein, Sec system product, B3705 product
''ECK3698, b3705, JW3683''<ref name='LIB:Riley_2006'/>, JW3683, oxaA''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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inner-membrane protein insertion factor<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
inner-membrane protein insertion factor<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;


Component of [[:Category:Complex:SecD-SecF-Yajc-YidC Secretion Complex|SecD-SecF-Yajc-YidC Secretion Complex]]<ref name='LIB:EcoCyc10.6'/>,[[:Category:Complex:Sec Protein Secretion Complex|Sec Protein Secretion Complex]]<ref name='LIB:EcoCyc10.6'/>
Component of [[:Category:Complex:SecD-SecF-Yajc-YidC Secretion Complex|SecD-SecF-Yajc-YidC Secretion Complex]]<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>; [[:Category:Complex:Sec Protein Secretion Complex|Sec Protein Secretion Complex]]<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


Inner membrane protein (IMP) integration factor; binds TM regions of nascent IMPs; required for Sec-independent IMP integration; associated with the Sec translocase<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''cytoplasmic insertase into membrane protein, Sec system<ref name='LIB:Riley_2006'/>, B3705<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YidC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK3698, JW3683, oxaA, b3705''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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|-
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s):   
transcription unit(s):   
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=yidC&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11197]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001178&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=yidC&loc=MG1655%3A3883099..3884745,W3110%3A3755339..3753693,REL606%3A3845437..3847083,DH10B%3A3980683..3982329,BW2952%3A3771432..3773078]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3771432&end=3773078&gene=yidC&aa=mdsqrnllviallfvsfmiwqaweqdknpqpqaqqttqttttaagsaadqgvpasgqgklisvktdvldltintrggdveqallpaypkelnstqpfqlletspqfiyqaqsgltgrdgpdnpangprplynvekdayvlaegqnelqvpmtytdaagntftktfvlkrgdyavnvnynvqnagekpleissfgqlkqsitlpphldtgssnfalhtfrgaaystpdekyekykfdtiadnenlnisskggwvamlqqyfatawiphndgtnnfytanlgngiaaigyksqpvlvqpgqtgamnstlwvgpeiqdkmaavaphldltvdygwlwfisqplfkllkwihsfvgnwgfsiiiitfivrgimypltkaqytsmakmrmlqpkiqamrerlgddkqrisqemmalykaekvnplggcfplliqmpiflalyymlmgsvelrqapfalwihdlsaqdpyyilpilmgvtmffiqkmspttvtdpmqqkimtfmpviftvfflwfpsglvlyyivsnlvtiiqqqliyrglekrglhsrekkks]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=yidC+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=yidC]]&nbsp;&nbsp;
 
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===Notes===
===Notes===
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yidC is an essential gene. YidC depletion activates the Psp response. YidC is required for proper membrane insertion of AtpE and CyoA.<ref name='LIB:EcoGene'/>




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==References==
==References==
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Latest revision as of 21:40, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

yidC

Gene Synonym(s)

ECK3698, b3705, JW3683[1], JW3683, oxaA

Product Desc.

inner-membrane protein insertion factor[2][3];

Component of SecD-SecF-Yajc-YidC Secretion Complex[2][3]; Sec Protein Secretion Complex[2][3]

Inner membrane protein (IMP) integration factor; binds TM regions of nascent IMPs; required for Sec-independent IMP integration; associated with the Sec translocase[4]

Product Synonyms(s)

cytoplasmic insertase into membrane protein, Sec system[1], B3705[2][1], YidC[2][1] , ECK3698, JW3683, oxaA, b3705

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s):

Regulation/Activity
Quick Links



        

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Notes

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yidC is an essential gene. YidC depletion activates the Psp response. YidC is required for proper membrane insertion of AtpE and CyoA.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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