feoC:Quickview: Difference between revisions

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{|   id="B49aee55e30632"  class=" tableEdit New_Quickview_Table" 
 
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[feoC:Gene|''feoC]]'' (synonyms: ''yhgG, ECK3397, b3410, JW3373'')<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/>
''feoC''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[feoC:Gene_Product(s)|YhgG product]]<ref name='LIB:Riley_2006'/>: predicted DNA-binding transcriptional regulator product, B3410 product, FeoC product
''yhgG, ECK3397, b3410, JW3373''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/>, JW3373''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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conserved protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
conserved protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


Ferrous iron uptake, required for full FeoB activity; putative Fe?S cluster redox or iron sensing transcriptional regulator <ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''predicted DNA-binding transcriptional regulator<ref name='LIB:Riley_2006'/>, B3410<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YhgG<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, FeoC<ref name='LIB:EcoCyc11.1'/><ref name='LIB:Riley_2006'/> , ECK3397, JW3373, yhgG, b3410''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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|-
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s):   
transcription unit(s):   
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=feoC&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12933]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120002425&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=feoC&loc=MG1655%3A3540750..3540986,W3110%3A4097688..4097452,REL606%3A3471393..3471629,BW2952%3A3427907..3428143]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3427907&end=3428143&gene=feoC&aa=masliqvrdllalrgrmeaaqisqtlntpqpminamlqqlesmgkavriqeepdgclsgsckscpegkaclrewwalr]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=feoC+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=feoC]]&nbsp;&nbsp;
 
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===Notes===
===Notes===
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Upregulated by GSNO in defined medium (anaerobic). FeoC role in ferrous iron uptake is undetermined, but requirement was demonstrated by Taudte, Ph.D. thesis,  2003, Martin Luther University, cited in Grass (2006). Fur regulon. Fnr regulon.<ref name='LIB:EcoGene'/>




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==References==
==References==
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Latest revision as of 21:50, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

feoC

Gene Synonym(s)

yhgG, ECK3397, b3410, JW3373[1][2], JW3373

Product Desc.

conserved protein[3][2]

Ferrous iron uptake, required for full FeoB activity; putative Fe?S cluster redox or iron sensing transcriptional regulator [4]

Product Synonyms(s)

predicted DNA-binding transcriptional regulator[1], B3410[3][1], YhgG[3][1], FeoC[2][1] , ECK3397, JW3373, yhgG, b3410

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s):

Regulation/Activity
Quick Links



        

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


Upregulated by GSNO in defined medium (anaerobic). FeoC role in ferrous iron uptake is undetermined, but requirement was demonstrated by Taudte, Ph.D. thesis, 2003, Martin Luther University, cited in Grass (2006). Fur regulon. Fnr regulon.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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