yhcH:Quickview: Difference between revisions

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{|{{Prettytable}}
{|   id="D49b0318737ffd"  class=" tableEdit New_Quickview_Table" 
 
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[yhcH:Gene|''yhcH]]'' (synonyms: ''ECK3210, b3221, JW3190'')<ref name='LIB:Riley_2006'/>
''yhcH''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[yhcH:Gene_Product(s)|YhcH product]]<ref name='LIB:Riley_2006'/>: conserved protein product, B3221 product
''ECK3210, b3221, JW3190''<ref name='LIB:Riley_2006'/>, JW3190''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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conserved protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
conserved protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


Required for swarming phenotype, function unknown; last gene in nanATEK-yhcH operon, but not required for growth on sialic acid<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''conserved protein<ref name='LIB:Riley_2006'/>, B3221<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YhcH<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK3210, JW3190, b3221''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:nanATEK-yhcH|nanATEK-yhcH]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:nanATEK-yhcH|nanATEK-yhcH]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=yhcH&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7675]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120004222&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=yhcH&loc=MG1655%3A3367500..3367036,W3110%3A3369333..3368869,REL606%3A3297376..3296912,DH10B%3A3465245..3464781,BW2952%3A3254184..3254648]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3254184&end=3254648&gene=yhcH&aa=mmmgevqslpsaglhpalqdaltlalaarpqekapgryelqgdnifmnvmtfntqspvekkaelheqyidiqlllngeerilfgmagtarqceefhheddyqlcstidneqaiilkpgmfavfmpgephkpgcvvgepgeikkvvvkvkadlma]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=yhcH+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=yhcH]]&nbsp;&nbsp;
 
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===Notes===
===Notes===
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EbgC is a distant homolog of YiaL, YhcH and YjgK; all four match pfam PF04074.  otherPDB (H. influenzae): 1JOP, 1S4C. The  H. influenzae structures reveals a likely active site, proposed to be a copper-dependent sugar isomerase. Although homologous to the beta subunit of the EbgAC evolved beta-galactosidase, no potential EbgA-like alpha subunit partners are apparent.<ref name='LIB:EcoGene'/>




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==References==
==References==
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Latest revision as of 21:41, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

yhcH

Gene Synonym(s)

ECK3210, b3221, JW3190[1], JW3190

Product Desc.

conserved protein[2][3]

Required for swarming phenotype, function unknown; last gene in nanATEK-yhcH operon, but not required for growth on sialic acid[4]

Product Synonyms(s)

conserved protein[1], B3221[2][1], YhcH[2][1] , ECK3210, JW3190, b3221

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): nanATEK-yhcH[2]

Regulation/Activity
Quick Links



        

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


EbgC is a distant homolog of YiaL, YhcH and YjgK; all four match pfam PF04074. otherPDB (H. influenzae): 1JOP, 1S4C. The H. influenzae structures reveals a likely active site, proposed to be a copper-dependent sugar isomerase. Although homologous to the beta subunit of the EbgAC evolved beta-galactosidase, no potential EbgA-like alpha subunit partners are apparent.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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