hpf:Quickview: Difference between revisions

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Latest revision as of 21:49, 27 May 2013

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Quickview

Standard Name	hpf
Gene Synonym(s)	yhbH, ECK3192, b3203, JW3170, rp5M^[1]^[2]
Product Desc.	probable sigma-54 modulation protein^[3]; predicted ribosome-associated, sigma 54 modulation protein^[2] Ribosome hibernation promoting factor HPF; stabilizes 70S dimers (100S); induced in stationary phase; raiA paralog has opposite effect on 70S dimers^[4]
Product Synonyms(s)	predicted ribosome-associated, sigma 54 modulation protein^[1], B3203^[3]^[1], YhbH^[3]^[1], Hpf^[2]^[1] , ECK3192, JW3170, yhbH, b3203
Function from GO	<GO_nr />
Knock-Out Phenotype	Non-essential ^[5]
Regulation/Expression	transcription unit(s): lptB-rpoN-yhbH-ptsN-yhbJ^[3], yhbG-rpoN-yhbH-ptsN-yhbJ, rpoN-yhbH-ptsN-yhbJ-npr^[3], rpoN-ORFII-ORF-III-ORF-IV-ORFV, rpoN-yhbH-ptsN-yhbJ-ptsO
Regulation/Activity
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Notes

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Homologous to RpoN modulators. Induced by AI-2 pheromone. The rpoN operon contains rpoN-hpf-ptsN-yhbJ-npr.^[4]

References

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↑ ^1.0 ^1.1 ^1.2 ^1.3 ^1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 ^3.2 ^3.3 ^3.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.0 ^4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
↑ Bubunenko, M et al. (2007) Essentiality of ribosomal and transcription antitermination proteins analyzed by systematic gene replacement in Escherichia coli. J. Bacteriol. 189 2844-53 PubMed

[LIB:Riley_2006-1] 1.0 ^1.1 ^1.2 ^1.3 ^1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)

[LIB:EcoCyc11.1-2] 2.0 ^2.1 ^2.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

[LIB:EcoCyc10.6-3] 3.0 ^3.1 ^3.2 ^3.3 ^3.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

[LIB:EcoGene-4] 4.0 ^4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.

[PMID:17277072-5] Bubunenko, M et al. (2007) Essentiality of ribosomal and transcription antitermination proteins analyzed by systematic gene replacement in Escherichia coli. J. Bacteriol. 189 2844-53 PubMed

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+{|   id="Q49aee918b9f31"  class=" tableEdit New_Quickview_Table"
 |-
-!{{table_heading_style}} |Gene Name
+!align=left {{table_heading_style}} |Standard Name
-|
+||
-[[hpf:Gene|''hpf]]'' (synonyms: ''yhbH, ECK3192, b3203, JW3170, rp5M'')<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/>
+''hpf''
 |-
-!{{table_heading_style}} |Product(s)
+!align=left {{table_heading_style}} |Gene Synonym(s)
-|
+||
-[[hpf:Gene_Product(s)|YhbH product]]<ref name='LIB:Riley_2006'/>: predicted ribosome-associated, sigma 54 modulation protein product, B3203 product, Hpf product
+''yhbH, ECK3192, b3203, JW3170, rp5M''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/>
 |-
-!{{table_heading_style}} |Description
+!align=left {{table_heading_style}} |Product Desc.
-|
+||
-probable sigma-54 modulation protein<ref name='LIB:EcoCyc10.6'/> predicted ribosome-associated, sigma 54 modulation protein<ref name='LIB:EcoCyc11.1'/>
+probable sigma-54 modulation protein<ref name='LIB:EcoCyc10.6'/>; predicted ribosome-associated, sigma 54 modulation protein<ref name='LIB:EcoCyc11.1'/>
+Ribosome hibernation promoting factor HPF; stabilizes 70S dimers (100S); induced in stationary phase; raiA paralog has opposite effect on 70S dimers<ref name='LIB:EcoGene'/>
+|-
+!align=left {{table_heading_style}} |Product Synonyms(s)
+||
+''predicted ribosome-associated, sigma 54 modulation protein<ref name='LIB:Riley_2006'/>, B3203<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YhbH<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Hpf<ref name='LIB:EcoCyc11.1'/><ref name='LIB:Riley_2006'/> , ECK3192, JW3170, yhbH, b3203''
+|-
+!align=left {{table_heading_style}} |Function from GO
+||
+<GO_nr />
 |-
-!{{table_heading_style}} |Knock-Out Phenotype
+!align=left {{table_heading_style}} |Knock-Out Phenotype
-|
+||
+Non-essential <ref name=PMID:17277072/>
 |-
-!{{table_heading_style}} |Regulation/Expression
+!align=left {{table_heading_style}} |Regulation/Expression
-|
+||
 transcription unit(s): [[:Category:Txn_unit:lptB-rpoN-yhbH-ptsN-yhbJ|lptB-rpoN-yhbH-ptsN-yhbJ]]<ref name='LIB:EcoCyc10.6'/>, yhbG-rpoN-yhbH-ptsN-yhbJ, [[:Category:Txn_unit:rpoN-yhbH-ptsN-yhbJ-npr|rpoN-yhbH-ptsN-yhbJ-npr]]<ref name='LIB:EcoCyc10.6'/>, rpoN-ORFII-ORF-III-ORF-IV-ORFV, rpoN-yhbH-ptsN-yhbJ-ptsO
 |-
-!{{table_heading_style}} |Regulation/Activity
+!align=left {{table_heading_style}} |Regulation/Activity
-|
+||
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+!align=left {{table_heading_style}} |Quick Links
+||
+[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=hpf&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11681]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001624&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=hpf&loc=MG1655%3A3344195..3344482,W3110%3A3346028..3346315,DH10B%3A3441940..3442227,BW2952%3A3231343..3231630]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3231343&end=3231630&gene=hpf&aa=mqlnitgnnveitealrefvtakfakleqyfdrinqvyvvlkvekvthtsdatlhvnggeihasaegqdmyaaidglidklarqltkhkdklkqh]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=hpf+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=hpf]]&nbsp;&nbsp;
+|- class="tableEdit_footer"
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 ===Notes===
 {{BacktoTop}}
+Homologous to RpoN modulators. Induced by AI-2 pheromone. The rpoN operon contains rpoN-hpf-ptsN-yhbJ-npr.<ref name='LIB:EcoGene'/>
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 ==References==
 {{BacktoTop}}
-{{RefHelp}}
 <references/>
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hpf:Quickview: Difference between revisions

Latest revision as of 21:49, 27 May 2013

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