yqeH:Quickview: Difference between revisions

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{|   id="T49b0360ee0918"  class=" tableEdit New_Quickview_Table" 
 
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[yqeH:Gene|''yqeH]]'' (synonyms: ''ECK2844, b2846, JW5454'')<ref name='LIB:Riley_2006'/>
''yqeH''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[yqeH:Gene_Product(s)|YqeH product]]<ref name='LIB:Riley_2006'/>: conserved protein with bipartite regulator domain product, B2846 product
''ECK2844, b2846, JW5454''<ref name='LIB:Riley_2006'/>, JW5454''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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conserved protein<ref name='LIB:EcoCyc10.6'/> conserved protein with bipartite regulator domain<ref name='LIB:EcoCyc11.1'/>  
conserved protein<ref name='LIB:EcoCyc10.6'/>; conserved protein with bipartite regulator domain<ref name='LIB:EcoCyc11.1'/>


Part of T3SS PAI ETT2 remnant, putative regulator<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''conserved protein with bipartite regulator domain<ref name='LIB:Riley_2006'/>, B2846<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YqeH<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK2844, JW5454, b2846''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:yqeH|yqeH]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:yqeH|yqeH]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=yqeH&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7466]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120004029&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=yqeH&loc=MG1655%3A2985558..2986190,W3110%3A2986192..2986824,DH10B%3A3079428..3080060,REL606%3A2882158..2882727,BW2952%3A2872706..2873338]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2872706&end=2873338&gene=yqeH&aa=mtssitneimqlytdrevlnmglcsryksltcnscsmhcqimpeesprlqycanscfcmwpeessyfnrgvvegiltknhnarlsgyifvdfsvsflrlflekdwidylastdmgivlvsdrnmqslanywrkhnsaisaviynddgldvanekirqlfigrylsftggntltqmeftimgymvsgynpyqiaevldmdirsiyaykqriekrmggkinelfirshsvqh]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=yqeH+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=yqeH]]&nbsp;&nbsp;
 
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===Notes===
===Notes===
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This gene is a remnant of the type three secretion system (T3SS) pathogenicity island ETT2. 18 kb of ETT2 has been deleted from K-12, leaving 10 kb of the presumably non-functional T3SS ETT2 remaining. YqeH is homologous to RmbA (S.t.) from the Spi-3 PAI. YqeH contains a putative DNA-binding domain.<ref name='LIB:EcoGene'/>




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==References==
==References==
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Latest revision as of 21:39, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

yqeH

Gene Synonym(s)

ECK2844, b2846, JW5454[1], JW5454

Product Desc.

conserved protein[2]; conserved protein with bipartite regulator domain[3]

Part of T3SS PAI ETT2 remnant, putative regulator[4]

Product Synonyms(s)

conserved protein with bipartite regulator domain[1], B2846[2][1], YqeH[2][1] , ECK2844, JW5454, b2846

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): yqeH[2]

Regulation/Activity
Quick Links



        

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Notes

[back to top]


This gene is a remnant of the type three secretion system (T3SS) pathogenicity island ETT2. 18 kb of ETT2 has been deleted from K-12, leaving 10 kb of the presumably non-functional T3SS ETT2 remaining. YqeH is homologous to RmbA (S.t.) from the Spi-3 PAI. YqeH contains a putative DNA-binding domain.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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