bamB:Quickview: Difference between revisions

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{{Tab On|Quickview|yfgL}}{{Tab|Gene|yfgL}}{{Tab|Gene Product(s)|yfgL}}{{Tab|Expression|yfgL}}{{Tab|Evolution|yfgL}}{{Tab|On One Page|yfgL}}{{TabsBottom}}
{{Tab On|Quickview|bamB}}{{Tab|Gene|bamB}}{{Tab|Gene Product(s)|bamB}}{{Tab|Expression|bamB}}{{Tab|Evolution|bamB}}{{Tab|On One Page|bamB}}{{TabsBottom}}
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[yfgL:Gene|''yfgL]]'' (synonyms: ''ECK2508, b2512, JW2496'')<ref name='LIB:Riley_2006'/>
''bamB''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[yfgL:Gene_Product(s)|YfgL product]]<ref name='LIB:Riley_2006'/>: protein assembly complex, lipoprotein component product, B2512 product
''ECK2508, b2512, JW2496, bamB '', yfgL<ref name='LIB:Riley_2006'/><ref name='LIB:EcoGene'/>, yfgL''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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YfgL<ref name='LIB:EcoCyc10.6'/> YfgL-lipoprotein component of outer membrane protein assembly complex<ref name='LIB:EcoCyc11.1'/>  
YfgL<ref name='LIB:EcoCyc10.6'/>; YfgL-lipoprotein component of outer membrane protein assembly complex<ref name='LIB:EcoCyc11.1'/>;


Component of [[:Category:Complex:Outer Membrane Protein Assembly Complex|Outer Membrane Protein Assembly Complex]]<ref name='LIB:EcoCyc11.1'/>
Component of [[:Category:Complex:Outer Membrane Protein Assembly Complex|Outer Membrane Protein Assembly Complex]]<ref name='LIB:EcoCyc11.1'/>


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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Product Synonyms(s)
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''protein assembly complex, lipoprotein component<ref name='LIB:Riley_2006'/>, B2512<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YfgL<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, BamB <ref name='LIB:EcoGene'/> , ECK2508, JW2496, yfgL, b2512''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:yfgL-der|yfgL-der]]<ref name='LIB:EcoCyc10.6'/>
 
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=bamB&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7320]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003892&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=bamB&loc=MG1655%3A2636674..2635496,W3110%3A2637308..2636130,REL606%3A2559471..2558293,BW2952%3A2521301..2522479]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2521301&end=2522479&gene=bamB&aa=mqlrklllpgllsvtllsgcslfnseedvvkmsplptvenqftpttawstsvgsgignfysnlhpaladnvvyaadraglvkalnaddgkeiwsvslaekdgwfskepallsggvtvsgghvyigsekaqvyalntsdgtvawqtkvagealsrpvvsdglvlihtsngqlqalneadgavkwtvnldmpslslrgesapttafgaavvggdngrvsavlmeqgqmiwqqrisqatgsteidrlsdvdttpvvvngvvfalayngnltaldlrsgqimwkrelgsvndfivdgnriylvdqndrvmaltidggvtlwtqsdllhrlltspvlyngnlvvgdsegylhwinvedgrfvaqqkvdssgfqtepvaadgklliqakdgtvysitr]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=bamB+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=bamB]]&nbsp;&nbsp;
 
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===Notes===
===Notes===
A consensus has been reached for renaming the genes that encode components of the outer membrane β-barrel assembly machine, (formerly known as the YaeT complex of ''E. coli'' or the Omp85 complex of ''N. meningitidis'').  The new designation for this multi-component structure is the Bam complex (for '''b'''eta-barrel '''a'''ssembly ''' m'''achine).
The Bam complex in ''E. coli'' consists of BamA (YaeT), BamB (YfgL), BamC (NlpB), BamD (YfiO), and BamE (SmpA).  Letters have been assigned on the basis of molecular weight, from highest to lowest <ref name='LIB:EcoGene'/>.
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==References==
==References==
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Latest revision as of 21:55, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

bamB

Gene Synonym(s)

ECK2508, b2512, JW2496, bamB , yfgL[1][2], yfgL

Product Desc.

YfgL[3]; YfgL-lipoprotein component of outer membrane protein assembly complex[4];

Component of Outer Membrane Protein Assembly Complex[4]

Product Synonyms(s)

protein assembly complex, lipoprotein component[1], B2512[3][1], YfgL[3][1], BamB [2] , ECK2508, JW2496, yfgL, b2512

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression
Regulation/Activity
Quick Links



        

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See Help:Quickview for help with entering information in the Quickview table.

Notes

A consensus has been reached for renaming the genes that encode components of the outer membrane β-barrel assembly machine, (formerly known as the YaeT complex of E. coli or the Omp85 complex of N. meningitidis). The new designation for this multi-component structure is the Bam complex (for beta-barrel assembly machine).

The Bam complex in E. coli consists of BamA (YaeT), BamB (YfgL), BamC (NlpB), BamD (YfiO), and BamE (SmpA). Letters have been assigned on the basis of molecular weight, from highest to lowest [2].

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References

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  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
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