gltX:Quickview: Difference between revisions

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{|   id="M49aee7b281ea4"  class=" tableEdit New_Quickview_Table" 
 
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[gltX:Gene|''gltX]]'' (synonyms: ''ECK2394, b2400, JW2395, gltM, gluRS, G259'')<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
''gltX''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[gltX:Gene_Product(s)|GltX product]]<ref name='LIB:Riley_2006'/>: glutamyl-tRNA synthetase product, B2400 product, GltM product
''ECK2394, b2400, JW2395, gltM, gluRS, G259''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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GLURS-MONOMER<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


Glutamate--tRNA ligase<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''glutamyl-tRNA synthetase<ref name='LIB:Riley_2006'/>, B2400<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, GltM<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, GltX<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK2394, JW2395, b2400''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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|-
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:gltX|gltX]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:gltX|gltX]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=gltX&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10407]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120000400&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=gltX&loc=MG1655%3A2518694..2517279,W3110%3A2526118..2524703,DH10B%3A2610459..2609044,REL606%3A2453548..2452133,BW2952%3A2403084..2404499]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2403084&end=2404499&gene=gltX&aa=mkiktrfapsptgylhvggartalyswlfarnhggefvlriedtdlerstpeaieaimdgmnwlslewdegpyyqtkrfdrynavidqmleegtaykcycskerlealreeqmakgekprydgrcrhshehhaddepcvvrfanpqegsvvfddqirgpiefsnqelddliirrtdgsptynfcvvvddwdmeithvirgedhinntprqinilkalkapvpvyahvsmingddgkklskrhgavsvmqyrddgylpeallnylvrlgwshgdqeiftreemikyftlnavsksasafntdkllwlnhhyinalppeyvathlqwhieqenidtrngpqladlvkllgercktlkemaqscryfyedfaefdadaakkhlrpvarqplevvrdklaaitdwtaenvhhaiqatadelevgmgkvgmplrvavtgagqspaldvtvhaigktrsierinkaldfiaerenqq]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=gltX+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=gltX]]&nbsp;&nbsp;
 
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===Notes===
===Notes===
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The zinc binding motif Cys98-x-Cys100-x(24)-Cys125-x-H127 of GltX categorizes this as a SWIM domain (standard C-x-C-x(n)-C-x-H with n=6-25).  Mutation analysis (C100Y) indicates SWIM plays a minimal role in overall binding of tRNA, but an increased role in orientation of the acceptor 3?-terminal adenosine.<ref name='LIB:EcoGene'/>




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==References==
==References==
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Latest revision as of 21:50, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

gltX

Gene Synonym(s)

ECK2394, b2400, JW2395, gltM, gluRS, G259[1][2]

Product Desc.

Glutamate--tRNA ligase[3]

Product Synonyms(s)

glutamyl-tRNA synthetase[1], B2400[2][1], GltM[2][1], GltX[2][1] , ECK2394, JW2395, b2400

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): gltX[2]

Regulation/Activity
Quick Links



        

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Notes

[back to top]


The zinc binding motif Cys98-x-Cys100-x(24)-Cys125-x-H127 of GltX categorizes this as a SWIM domain (standard C-x-C-x(n)-C-x-H with n=6-25). Mutation analysis (C100Y) indicates SWIM plays a minimal role in overall binding of tRNA, but an increased role in orientation of the acceptor 3?-terminal adenosine.[3]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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