hicB:Quickview: Difference between revisions

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{{Tab On|Quickview|ydcQ}}{{Tab|Gene|ydcQ}}{{Tab|Gene Product(s)|ydcQ}}{{Tab|Expression|ydcQ}}{{Tab|Evolution|ydcQ}}{{Tab|On One Page|ydcQ}}{{TabsBottom}}
{{Tab On|Quickview|hicB}}{{Tab|Gene|hicB}}{{Tab|Gene Product(s)|hicB}}{{Tab|Expression|hicB}}{{Tab|Evolution|hicB}}{{Tab|On One Page|hicB}}{{TabsBottom}}
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[ydcQ:Gene|''ydcQ]]'' (synonyms: ''ECK1432, b1438, JW1433'')<ref name='LIB:Riley_2006'/>
''hicB''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[ydcQ:Gene_Product(s)|YdcQ product]]<ref name='LIB:Riley_2006'/>: predicted DNA-binding transcriptional regulator product, B1438 product
''ECK1432, b1438, JW1433'', ydcQ<ref name='LIB:Riley_2006'/>, JW1433, ydcQ''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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hypothetical protein<ref name='LIB:EcoCyc10.6'/> predicted DNA-binding transcriptional regulator<ref name='LIB:EcoCyc11.1'/>  
hypothetical protein<ref name='LIB:EcoCyc10.6'/>; predicted DNA-binding transcriptional regulator<ref name='LIB:EcoCyc11.1'/>


Antitoxin for the YncN(HicA) mRNA interferase toxin;  mutational suppressor of null rpoE lethality<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''predicted DNA-binding transcriptional regulator<ref name='LIB:Riley_2006'/>, B1438<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HicB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK1432, JW1433, ydcQ, b1438''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:yncN|yncN]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:yncN|yncN]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=ydcQ&s=search]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=ydcQ&loc=MG1655%3A1507511..1507948,W3110%3A1511201..1511638,DH10B%3A1598106..1598543,REL606%3A1479597..1480034,BW2952%3A1399591..1400007]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1399591&end=1400007&gene=ydcQ&aa=mretveimrypvtltpapeggymvsfvdipealtqgetvaeameaakdalltafdfyfedneliplpsplnshdhfievplsvaskvlllnaflqseitqqelarrigkpkqeitrlfnlhhatkidavqlaakalgkelslvmv]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ydcQ+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=ydcQ]]&nbsp;&nbsp;
 
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===Notes===
===Notes===
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IS insertions in ydcQ were isolated as suppressors of rpoE lethality; in wt cells, ydcQ mutants downregulate extracytoplasmic stress responses and OM vesicle production is reduced (Button, 2006). A longer 145 aa translation is unlikely due to a poor RBS and a lack of seqeunce  conservation.<ref name='LIB:EcoGene'/>




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==References==
==References==
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Latest revision as of 21:43, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

hicB

Gene Synonym(s)

ECK1432, b1438, JW1433, ydcQ[1], JW1433, ydcQ

Product Desc.

hypothetical protein[2]; predicted DNA-binding transcriptional regulator[3]

Antitoxin for the YncN(HicA) mRNA interferase toxin; mutational suppressor of null rpoE lethality[4]

Product Synonyms(s)

predicted DNA-binding transcriptional regulator[1], B1438[2][1], HicB[2][1] , ECK1432, JW1433, ydcQ, b1438

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): yncN[2]

Regulation/Activity
Quick Links



        

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


IS insertions in ydcQ were isolated as suppressors of rpoE lethality; in wt cells, ydcQ mutants downregulate extracytoplasmic stress responses and OM vesicle production is reduced (Button, 2006). A longer 145 aa translation is unlikely due to a poor RBS and a lack of seqeunce conservation.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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