elfD:Quickview: Difference between revisions

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{{Tab On|Quickview|ycbR}}{{Tab|Gene|ycbR}}{{Tab|Gene Product(s)|ycbR}}{{Tab|Expression|ycbR}}{{Tab|Evolution|ycbR}}{{Tab|On One Page|ycbR}}{{TabsBottom}}
{{Tab On|Quickview|elfD}}{{Tab|Gene|elfD}}{{Tab|Gene Product(s)|elfD}}{{Tab|Expression|elfD}}{{Tab|Evolution|elfD}}{{Tab|On One Page|elfD}}{{TabsBottom}}
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{|{{Prettytable}}
{|   id="U49b02b4192e9e"  class=" tableEdit New_Quickview_Table" 
 
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[ycbR:Gene|''ycbR]]'' (synonyms: ''ECK0930, b0939, JW0922'')<ref name='LIB:Riley_2006'/>
''elfD''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[ycbR:Gene_Product(s)|YcbR product]]<ref name='LIB:Riley_2006'/>: predicted periplasmic pilin chaperone product, B0939 product
''ycbR, ECK0930, b0939, JW0922''<ref name='LIB:Riley_2006'/>, JW0922''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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predicted periplasmic pilin chaperone<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
predicted periplasmic pilin chaperone<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


Putative periplasmic pilus chaperone, induced by AI-2 pheromone, function unknown<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''predicted periplasmic pilin chaperone<ref name='LIB:Riley_2006'/>, B0939<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YcbR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0930, JW0922, ycbR, b0939''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:ycbR|ycbR]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:ycbR|ycbR]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=elfD&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6481]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003081&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=elfD&loc=MG1655%3A997713..998414,W3110%3A998912..999613,DH10B%3A1051641..1052342,REL606%3A1015581..1016282,BW2952%3A900681..901382]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=900681&end=901382&gene=elfD&aa=mktcitkgivtvsltaillscssawaagkggiglaatrlvysegeeqislgvrntspdvpyliqswvmtpdnkksadfiitpplfvlnpanenllrimyigaplakdretlfftsvravpsttkrkegntlkiatqsviklfwrpkglayplgeapaklrctssadmvtvsnptpyfitltdlkiggkvvknqmispfdkyqfslpkgaknssvtyrtindygaetpqlncks]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=elfD+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=elfD]]&nbsp;&nbsp;
 
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===Notes===
===Notes===
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Probable false positive lipoprotein prediction, Cys not conserved. First 26 aa are a predicted type I signal peptide. YcbR has  Ig-like domains: pfam PF00345 aligns to N-terminal residues 31-149, and pfam PF02753 aligns to C-terminal residues 154-227.<ref name='LIB:EcoGene'/>




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==References==
==References==
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Latest revision as of 21:44, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

elfD

Gene Synonym(s)

ycbR, ECK0930, b0939, JW0922[1], JW0922

Product Desc.

predicted periplasmic pilin chaperone[2][3]

Putative periplasmic pilus chaperone, induced by AI-2 pheromone, function unknown[4]

Product Synonyms(s)

predicted periplasmic pilin chaperone[1], B0939[2][1], YcbR[2][1] , ECK0930, JW0922, ycbR, b0939

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ycbR[2]

Regulation/Activity
Quick Links



        

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


Probable false positive lipoprotein prediction, Cys not conserved. First 26 aa are a predicted type I signal peptide. YcbR has Ig-like domains: pfam PF00345 aligns to N-terminal residues 31-149, and pfam PF02753 aligns to C-terminal residues 154-227.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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