ytfE:Quickview: Difference between revisions

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{|   id="U49b036a35980a"  class=" tableEdit New_Quickview_Table" 
 
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[ytfE:Gene|''ytfE]]'' (synonyms: ''ECK4205, b4209, JW4167'')<ref name='LIB:Riley_2006'/>
''ytfE''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[ytfE:Gene_Product(s)|YtfE product]]<ref name='LIB:Riley_2006'/>: predicted regulator of cell morphogenesis and cell wall metabolism product, B4209 product
''ECK4205, b4209, JW4167''<ref name='LIB:Riley_2006'/>, dnrN, JW4167''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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iron metabolism protein<ref name='LIB:EcoCyc10.6'/> protein involved in repair of stress-damaged iron-sulfur clusters<ref name='LIB:EcoCyc11.1'/>  
iron metabolism protein<ref name='LIB:EcoCyc10.6'/>; protein involved in repair of stress-damaged iron-sulfur clusters<ref name='LIB:EcoCyc11.1'/>


Iron-sulfur cluster repair protein; confers resistance to nitric oxide and hydrogen peroxide; di-iron center<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''predicted regulator of cell morphogenesis and cell wall metabolism<ref name='LIB:Riley_2006'/>, B4209<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YtfE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , dnrN, ECK4205, JW4167, b4209''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:ytfE|ytfE]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:ytfE|ytfE]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=ytfE&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7866]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120004361&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=ytfE&loc=MG1655%3A4430006..4429344,W3110%3A4436663..4436001,REL606%3A4416982..4416320,DH10B%3A4530368..4529706,BW2952%3A4368079..4368741]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4368079&end=4368741&gene=ytfE&aa=mayrdqplgelalsiprasalfrkydmdyccggkqtlaraaarkeldvevieaelaklaeqpiekdwrsaplaeiidhiivryhdrhreqlpelilqatkvervhadkpsvpkgltkyltmlheelsshmmkeeqilfpmikqgmgsqamgpisvmesehdeagellevikhttnnvtpppeacttwkamyngineliddlmdhislennvlfpralage]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ytfE+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=ytfE]]&nbsp;&nbsp;
 
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===Notes===
===Notes===
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ytfE is induced by NO as part of the NsrR regulon. YtfE can regenerate damaged AcnB and FumA in vitro (Justino, 2007). A ytfE mutant  grows poorly under anaerobic respiratory conditions and has an increased sensitivity to iron starvation. ytfE is homologous to S. aureus scdA. ytfE expression is increased in fnr and fur mutants, but no obvious Fnr or Fur binding sites were found.<ref name='LIB:EcoGene'/>




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==References==
==References==
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Latest revision as of 21:39, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

ytfE

Gene Synonym(s)

ECK4205, b4209, JW4167[1], dnrN, JW4167

Product Desc.

iron metabolism protein[2]; protein involved in repair of stress-damaged iron-sulfur clusters[3]

Iron-sulfur cluster repair protein; confers resistance to nitric oxide and hydrogen peroxide; di-iron center[4]

Product Synonyms(s)

predicted regulator of cell morphogenesis and cell wall metabolism[1], B4209[2][1], YtfE[2][1] , dnrN, ECK4205, JW4167, b4209

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ytfE[2]

Regulation/Activity
Quick Links



        

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Notes

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ytfE is induced by NO as part of the NsrR regulon. YtfE can regenerate damaged AcnB and FumA in vitro (Justino, 2007). A ytfE mutant grows poorly under anaerobic respiratory conditions and has an increased sensitivity to iron starvation. ytfE is homologous to S. aureus scdA. ytfE expression is increased in fnr and fur mutants, but no obvious Fnr or Fur binding sites were found.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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