soxS:Quickview: Difference between revisions

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{|   id="Q49b025775f8ee"  class=" tableEdit New_Quickview_Table" 
 
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[soxS:Gene|''soxS]]'' (synonyms: ''ECK4054, b4062, JW4023'')<ref name='LIB:Riley_2006'/>
''soxS''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[soxS:Gene_Product(s)|SoxS product]]<ref name='LIB:Riley_2006'/>: DNA-binding transcriptional dual regulator product, B4062 product, regulation of superoxide response regulon product
''ECK4054, b4062, JW4023''<ref name='LIB:Riley_2006'/>, JW4023''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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SoxS transcriptional activator<ref name='LIB:EcoCyc10.6'/> SoxS transcriptional dual regulator<ref name='LIB:EcoCyc11.1'/>  
SoxS transcriptional activator<ref name='LIB:EcoCyc10.6'/>; SoxS transcriptional dual regulator<ref name='LIB:EcoCyc11.1'/>


Global transcription regulator for superoxide response; AraC family<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''DNA-binding transcriptional dual regulator<ref name='LIB:Riley_2006'/>, B4062<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, SoxS<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, regulation of superoxide response regulon<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK4054, JW4023, b4062''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:soxS|soxS]]<ref name='LIB:EcoCyc10.6'/>, OP00296  
transcription unit(s): [[:Category:Txn_unit:soxS|soxS]]<ref name='LIB:EcoCyc10.6'/>, OP00296  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=soxS&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10958]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120000947&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=soxS&loc=MG1655%3A4275406..4275083,W3110%3A4280973..4280650,DH10B%3A4375102..4374779,REL606%3A4256316..4255993,BW2952%3A4213928..4214251]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4213928&end=4214251&gene=soxS&aa=mshqkiiqdliawidehidqplnidvvakksgyskwylqrmfrtvthqtlgdyirqrrlllaavelrtterpifdiamdlgyvsqqtfsrvfrrqfdrtpsdyrhrl]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=soxS+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=soxS]]&nbsp;&nbsp;
 
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===Notes===
===Notes===
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Induces sox regulon when superoxide levels increase. Induced during biofilm formation.  SoxS is unstable except in a lon ftsH double mutant.  This unstability is suggested to play a role in the rapid return of the regulon's gene expression to preinduced levels.<ref name='LIB:EcoGene'/>




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==References==
==References==
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Latest revision as of 21:46, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

soxS

Gene Synonym(s)

ECK4054, b4062, JW4023[1], JW4023

Product Desc.

SoxS transcriptional activator[2]; SoxS transcriptional dual regulator[3]

Global transcription regulator for superoxide response; AraC family[4]

Product Synonyms(s)

DNA-binding transcriptional dual regulator[1], B4062[2][1], SoxS[2][1], regulation of superoxide response regulon[2][1] , ECK4054, JW4023, b4062

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): soxS[2], OP00296

Regulation/Activity
Quick Links



        

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Notes

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Induces sox regulon when superoxide levels increase. Induced during biofilm formation. SoxS is unstable except in a lon ftsH double mutant. This unstability is suggested to play a role in the rapid return of the regulon's gene expression to preinduced levels.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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