hofN:Quickview: Difference between revisions

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{|{{Prettytable}}
{|   id="A49aee8f632a70"  class=" tableEdit New_Quickview_Table" 
 
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[hofN:Gene|''hofN]]'' (synonyms: ''yrfC, ECK3381, b3394, JW3357'')<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/><ref name='LIB:EcoCyc10.6'/>
''hofN''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[hofN:Gene_Product(s)|YrfC product]]<ref name='LIB:Riley_2006'/>: predicted fimbrial assembly protein product, B3394 product, HofN product
''yrfC, ECK3381, b3394, JW3357''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/><ref name='LIB:EcoCyc10.6'/>, JW3357''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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protein involved in utilization of DNA as a carbon source<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
protein involved in utilization of DNA as a carbon source<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


Required for the utilization of DNA as a carbon source; H. influenzae competence protein ComB homolog; putative fimbrial transport protein<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''predicted fimbrial assembly protein<ref name='LIB:Riley_2006'/>, B3394<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HofN<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YrfC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK3381, JW3357, yrfC, b3394''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:yrfA|yrfA]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:yrfA|yrfA]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=hofN&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7738]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120004281&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=hofN&loc=MG1655%3A3519994..3519455,W3110%3A4118444..4118983,REL606%3A3450115..3450654,BW2952%3A3406612..3407151]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3406612&end=3407151&gene=hofN&aa=mnppinflpwrqqrrtaflrfwllmfvaplllavgitlilrltgsaearidavllqaeqqlarslqitkprlleqqqlreqrsqrqrqrqftrdwqsalealaallpehawlttiswqqgtleikglttsitalnaletslrqdasfhlnqrgatqqdaqgrwqfeyqltrkvsdehvl]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=hofN+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=hofN]]&nbsp;&nbsp;
 
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===Notes===
===Notes===
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==References==
==References==
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Latest revision as of 21:49, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

hofN

Gene Synonym(s)

yrfC, ECK3381, b3394, JW3357[1][2][3], JW3357

Product Desc.

protein involved in utilization of DNA as a carbon source[3][2]

Required for the utilization of DNA as a carbon source; H. influenzae competence protein ComB homolog; putative fimbrial transport protein[4]

Product Synonyms(s)

predicted fimbrial assembly protein[1], B3394[3][1], HofN[3][1], YrfC[3][1] , ECK3381, JW3357, yrfC, b3394

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): yrfA[3]

Regulation/Activity
Quick Links



        

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See Help:Quickview for help with entering information in the Quickview table.

Notes

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References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 3.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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