ygfZ:Quickview: Difference between revisions

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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[ygfZ:Gene|''ygfZ]]'' (synonyms: ''ECK2893, b2898, JW2866, up14, yzzW'')<ref name='LIB:Riley_2006'/>
''ygfZ''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[ygfZ:Gene_Product(s)|YgfZ product]]<ref name='LIB:Riley_2006'/>: predicted folate-dependent regulatory protein product, B2898 product, YzzW product
''ECK2893, b2898, JW2866, up14, yzzW''<ref name='LIB:Riley_2006'/>, yzzW''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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predicted folate-dependent regulatory protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
predicted folate-dependent regulatory protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


Hda suppressor; also involved in methylthio modification at 2-methylthio-6-iodeadenosine in tRNA; mutants grow slowly, especially at low temperature; slow growth is suppressed by MnmE; binds folate<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''predicted folate-dependent regulatory protein<ref name='LIB:Riley_2006'/>, B2898<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YzzW<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YgfZ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK2893, JW2866, yzzW, b2898''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:ygfZ|ygfZ]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:ygfZ|ygfZ]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=ygfZ&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7511]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120004073&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=ygfZ&loc=MG1655%3A3039335..3040315,W3110%3A3039969..3040949,REL606%3A2927066..2928046,DH10B%3A3133205..3134185,BW2952%3A2926483..2927463]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2926483&end=2927463&gene=ygfZ&aa=maftpfpprqptasarlpltlmtlddwalatitgadsekymqgqvtadvsqmaedqhllaahcdakgkmwsnlrlfrdgdgfawierrsvrepqltelkkyavfskvtiapddervllgvagfqaraalanlfselpskekqvvkegattllwfehpaerflivtdeatanmltdklrgeaelnnsqqwlalnieagfpvidaansgqfipqatnlqalggisfkkgcytgqemvarakfrgankralwllagsasrlpeagedlelkmgenwrrtgtvlaavkledgqvvvqvvmnndmepdsifrvrddantlhieplpyslee]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ygfZ+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=ygfZ]]&nbsp;&nbsp;
 
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===Notes===
===Notes===
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A null ygfZ mutation suppresses a null hda mutation. YgfZ may be a regulatory working through modified tRNAs. YgfZ is structurally similar to an enzyme involved in the betaine catabolism pathway (DMGO) of A. globiformis.  YgfZ has a yeast homolog, CAF17, that is a component of the transcriptional regulatory complex. Induced by plumbagin.<ref name='LIB:EcoGene'/>




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==References==
==References==
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Latest revision as of 21:41, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

ygfZ

Gene Synonym(s)

ECK2893, b2898, JW2866, up14, yzzW[1], yzzW

Product Desc.

predicted folate-dependent regulatory protein[2][3]

Hda suppressor; also involved in methylthio modification at 2-methylthio-6-iodeadenosine in tRNA; mutants grow slowly, especially at low temperature; slow growth is suppressed by MnmE; binds folate[4]

Product Synonyms(s)

predicted folate-dependent regulatory protein[1], B2898[2][1], YzzW[2][1], YgfZ[2][1] , ECK2893, JW2866, yzzW, b2898

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ygfZ[2]

Regulation/Activity
Quick Links



        

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Notes

[back to top]


A null ygfZ mutation suppresses a null hda mutation. YgfZ may be a regulatory working through modified tRNAs. YgfZ is structurally similar to an enzyme involved in the betaine catabolism pathway (DMGO) of A. globiformis. YgfZ has a yeast homolog, CAF17, that is a component of the transcriptional regulatory complex. Induced by plumbagin.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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