Colibri: Difference between revisions
/Volumes/r3/t3/ul/working/touchTables/touch_all_tables.php |
|||
| (7 intermediate revisions by 3 users not shown) | |||
| Line 2: | Line 2: | ||
[[Category:Databases]] | [[Category:Databases]] | ||
[[Category:E. coli Databases]] | [[Category:E. coli Databases]] | ||
[[Category:IECA Portal]] | |||
<protect><!--box uid=63ce1649aab8b3180235b0af7618f667.1649.N4a2448c152993--> | |||
<!-- | |||
****************************************************************************************** | |||
* | |||
* ** PLEASE DON'T EDIT THIS TABLE DIRECTLY. Use the edit table link under the table. ** | |||
* | |||
****************************************************************************************** --> | |||
{| {{Prettytable}} width='30%' align="right" id="N4a2448c152993" class=" tableEdit Database_table" | |||
|- | |- | ||
!align=left {{table heading style}} |Link/URL: | |||
| | || | ||
[http://genolist.pasteur.fr/Colibri/ Colibri] | |||
|- | |- | ||
!align=left {{table heading style}} |What: | |||
| | || | ||
Provides a complete dataset of DNA and protein sequences derived from the paradigm strain E. coli K-12, linked to the relevant annotations and functional assignments. | |||
|- | |- | ||
| | !align=left {{table heading style}} |Who: | ||
| | || | ||
I. Moszer | |||
|- | |- | ||
| Updates | !align=left {{table heading style}} |Updates: | ||
| | || | ||
|- | |- | ||
| Upcoming events | !align=left {{table heading style}} |Upcoming events: | ||
| | || | ||
|- | |- | ||
| Web Services | !align=left {{table heading style}} |Web Services: | ||
| | || | ||
|- class="tableEdit_footer" | |||
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=63ce1649aab8b3180235b0af7618f667.1649.N4a2448c152993&page=1649&pagename={{FULLPAGENAMEE}}&type=1&template=Database_table edit table]</span> || | |||
|} | |} | ||
=About {{PAGENAME}}= | <!--box uid=63ce1649aab8b3180235b0af7618f667.1649.N4a2448c152993--></protect> | ||
==About {{PAGENAME}}== | |||
[http://genolist.pasteur.fr/Colibri/ {{PAGENAME}}] is yet another database that allows you to find out general information about the genes and proteins from ''E.coli''. This database isn't updated very often so any information received here should be verified using another source. | [http://genolist.pasteur.fr/Colibri/ {{PAGENAME}}] is yet another database that allows you to find out general information about the genes and proteins from ''E.coli''. This database isn't updated very often so any information received here should be verified using another source. | ||
=Content= | ==Content== | ||
'''General Information'''<BR> | '''General Information'''<BR> | ||
synonyms <BR> | synonyms <BR> | ||
| Line 51: | Line 68: | ||
Swiss-Prot ID | Swiss-Prot ID | ||
=Using {{PAGENAME}}= | ==Using {{PAGENAME}}== | ||
==Browsing== | ===Browsing=== | ||
You may select a specific region of the genome to view, but no other general information may be done | You may select a specific region of the genome to view, but no other general information may be done | ||
==Searching== | ===Searching=== | ||
query by EG# (http://genolist.pasteur.fr/Colibri/genome.cgi?external_query+edd) | query by EG# (http://genolist.pasteur.fr/Colibri/genome.cgi?external_query+edd) | ||
==Usage examples== | ===Usage examples=== | ||
''Add links to additional pages describing success stories here.'' | ''Add links to additional pages describing success stories here.'' | ||
=Other sites with related content= | ==Other sites with related content== | ||
EcoGene <BR> | EcoGene <BR> | ||
EcoCyc | EcoCyc | ||
=Technology= | ==Technology== | ||
==Web Services/API== | ===Web Services/API=== | ||
=Discussion= | ==Discussion== | ||
==References== | |||
{{BacktoTop}} | |||
{{RefHelp}} | |||
<references /> | |||
= | ==External Links== | ||
=External Links= | |||
[http://genolist.pasteur.fr/Colibri/ {{PAGENAME}}] | [http://genolist.pasteur.fr/Colibri/ {{PAGENAME}}] | ||
==Discussion of {{PAGENAME}} on other websites== | ===Discussion of {{PAGENAME}} on other websites=== | ||
Latest revision as of 00:11, 23 May 2010
You can help EcoliWiki by editing the content of this page. For information about becoming a registered user and obtaining editing privileges, see Help:Accounts.
| Link/URL: | |
|---|---|
| What: |
Provides a complete dataset of DNA and protein sequences derived from the paradigm strain E. coli K-12, linked to the relevant annotations and functional assignments. |
| Who: |
I. Moszer |
| Updates: | |
| Upcoming events: | |
| Web Services: |
|
| edit table |
About Colibri
Colibri is yet another database that allows you to find out general information about the genes and proteins from E.coli. This database isn't updated very often so any information received here should be verified using another source.
Content
General Information
synonyms
Type (CDS or not)
Gene Name Mnemonic
Accession number
BLAST
FASTA
Gene Information
Location (kb)
Calculated map
Coordinates
Orientation
Codon Usage
Protein Information
Molecular Mass
Isoelectric Point
Structure Information
Swiss-Prot ID
Using Colibri
Browsing
You may select a specific region of the genome to view, but no other general information may be done
Searching
query by EG# (http://genolist.pasteur.fr/Colibri/genome.cgi?external_query+edd)
Usage examples
Add links to additional pages describing success stories here.
EcoGene
EcoCyc
Technology
Web Services/API
Discussion
References
See Help:References for how to manage references in EcoliWiki.