mgtA:Evolution: Difference between revisions

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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="F46ac1b7ea9dbe"  class=" tableEdit Evolution_homologs_table" 
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!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Anopheles gambiae''   
''Anopheles gambiae''   
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From Inparanoid:20070104  
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''Apis mellifera''   
''Apis mellifera''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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From Inparanoid:20070104  
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''Bos taurus''   
''Bos taurus''   
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From Inparanoid:20070104  
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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From Inparanoid:20070104  
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Canis familiaris''   
''Canis familiaris''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Ciona intestinalis''   
''Ciona intestinalis''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Danio rerio''   
''Danio rerio''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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From Inparanoid:20070104  
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''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
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From Inparanoid:20070104  
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''Gallus gallus''   
''Gallus gallus''   
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''Homo sapiens''   
''Homo sapiens''   
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''Macaca mulatta''   
''Macaca mulatta''   
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From Inparanoid:20070104  
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''Monodelphis domestica''   
''Monodelphis domestica''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Mus musculus''   
''Mus musculus''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Oryza gramene''   
''Oryza gramene''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Pan troglodytes''   
''Pan troglodytes''   
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From Inparanoid:20070104  
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''Rattus norvegicus''   
''Rattus norvegicus''   
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''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
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''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Takifugu rubripes''   
''Takifugu rubripes''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Shigella flexneri''   
''Shigella flexneri''   
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From SHIGELLACYC  
From SHIGELLACYC  
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''E. coli'' O157
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MGTA
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From ECOO157CYC
 
|- class="tableEdit_footer"
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_418663&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_418663&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


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|- {{table_heading_style}}
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00702 PF00702  haloacid dehalogenase-like hydrolase]
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|-
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00122 PF00122  E1-E2 ATPase]
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|-
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00690 PF00690  Cation transporter/ATPase, N-terminus]
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|-
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
|
[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR24093:SF62 PTHR24093:SF62]
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|-
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
|
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=56784 SUPERFAMILY:56784]
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|-
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=81653 SUPERFAMILY:81653]
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|-
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
|
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=81660 SUPERFAMILY:81660]
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|-  
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
|
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00690 PFAM:PF00690]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=81665 SUPERFAMILY:81665]
|
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[[EcoCyc]]
|
EcoCyc:EG12525
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[[EcoGene]]
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EcoGene:EG12525
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[[RegulonDB]]
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RegulonDB:ECK120002316
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[[EchoBASE]]
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EchoBASE:EB2416
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[[ASAP]]
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ASAP:ABE-0013883
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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<protect><!--Families_notes--></protect>
<protect><!--Families_notes--></protect>
===Notes===
===Notes===
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==References==
==References==
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{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
[[Category:Genes with homologs in Anopheles gambiae ]][[Category:Genes with homologs in Apis mellifera ]][[Category:Genes with homologs in Arabidopsis thaliana ]][[Category:Genes with homologs in Bos taurus ]][[Category:Genes with homologs in Caenorhabditis briggsae ]][[Category:Genes with homologs in Caenorhabditis elegans ]][[Category:Genes with homologs in Canis familiaris ]][[Category:Genes with homologs in Ciona intestinalis ]][[Category:Genes with homologs in Danio rerio ]][[Category:Genes with homologs in Dictyostelium discoideum ]][[Category:Genes with homologs in Drosophila melanogaster ]][[Category:Genes with homologs in Drosophila pseudoobscura ]][[Category:Genes with homologs in Gallus gallus ]][[Category:Genes with homologs in Homo sapiens ]][[Category:Genes with homologs in Macaca mulatta ]][[Category:Genes with homologs in Monodelphis domestica ]][[Category:Genes with homologs in Mus musculus ]][[Category:Genes with homologs in Oryza gramene ]][[Category:Genes with homologs in Pan troglodytes ]][[Category:Genes with homologs in Rattus norvegicus ]][[Category:Genes with homologs in Saccharomyces cerevisiae ]][[Category:Genes with homologs in Schizosaccharomyces pombe ]][[Category:Genes with homologs in Takifugu rubripes ]][[Category:Genes with homologs in Tetraodon nigroviridis ]][[Category:Genes with homologs in Xenopus tropicalis ]][[Category:Genes with homologs in Shigella flexneri ]][[Category:Genes with homologs in E. coli O157]]</noinclude>
===Categories===
{{BacktoTop}}
[[Category:Genes with homologs in Anopheles gambiae ]]
[[Category:Genes with homologs in Apis mellifera ]]
[[Category:Genes with homologs in Arabidopsis thaliana ]]
[[Category:Genes with homologs in Bos taurus ]]
[[Category:Genes with homologs in Caenorhabditis briggsae ]]
[[Category:Genes with homologs in Caenorhabditis elegans ]]
[[Category:Genes with homologs in Canis familiaris ]]
[[Category:Genes with homologs in Ciona intestinalis ]]
[[Category:Genes with homologs in Danio rerio ]]
[[Category:Genes with homologs in Dictyostelium discoideum ]]
[[Category:Genes with homologs in Drosophila melanogaster ]]
[[Category:Genes with homologs in Drosophila pseudoobscura ]]
[[Category:Genes with homologs in Gallus gallus ]]
[[Category:Genes with homologs in Homo sapiens ]]
[[Category:Genes with homologs in Macaca mulatta ]]
[[Category:Genes with homologs in Monodelphis domestica ]]
[[Category:Genes with homologs in Mus musculus ]]
[[Category:Genes with homologs in Oryza gramene ]]
[[Category:Genes with homologs in Pan troglodytes ]]
[[Category:Genes with homologs in Rattus norvegicus ]]
[[Category:Genes with homologs in Saccharomyces cerevisiae ]]
[[Category:Genes with homologs in Schizosaccharomyces pombe ]]
[[Category:Genes with homologs in Takifugu rubripes ]]
[[Category:Genes with homologs in Tetraodon nigroviridis ]]
[[Category:Genes with homologs in Xenopus tropicalis ]]
[[Category:Genes with homologs in Shigella flexneri ]]
[[Category:Genes with homologs in E. coli O157]]

Latest revision as of 08:38, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000025730 (score: 1.000; bootstrap: 97%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000005221 (score: 1.000; bootstrap: 95%)
  • ENSAPMP00000003828 (score: 0.441)
  • ENSAPMP00000013542 (score: 0.403)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT4G00900 (score: 1.000; bootstrap: 75%)
  • AT1G07810 (score: 0.579)
  • AT1G07670 (score: 0.412)
  • AT1G10130 (score: 0.287)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000015441 (score: 1.000; bootstrap: 93%)
  • ENSBTAP00000001251 (score: 0.409)
  • ENSBTAP00000001838 (score: 0.118)
  • ENSBTAP00000019704 (score: 0.116)
  • ENSBTAP00000008594 (score: 0.088)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00037751 (score: 1.000; bootstrap: 99%)
  • WBGene00029812 (score: 0.074)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00004736 (score: 1.000; bootstrap: 91%)
  • WBGene00004063 (score: 0.068)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000029564 (score: 1.000; bootstrap: 94%)
  • ENSCAFP00000009147 (score: 0.535)
  • ENSCAFP00000020630 (score: 0.094)
  • ENSCAFP00000012394 (score: 0.088)
  • ENSCAFP00000025459 (score: 0.086)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000012706 (score: 1.000; bootstrap: 83%)
  • ENSCINP00000017033 (score: 0.086)
  • ENSCINP00000017173 (score: 0.073)
  • ENSCINP00000016997 (score: 0.063)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-020905-1 (score: 1.000; bootstrap: 99%)
  • ZDB-CDNA-041114-2 (score: 1.000; bootstrap: 99%)
  • ZDB-CDNA-040425-1628 (score: 0.807)
  • ZDB-GENE-040426-702 (score: 0.807)
  • ZDB-GENE-030131-867 (score: 0.777)
  • ZDB-CDNA-040425-61 (score: 0.051)
  • ZDB-CDNA-040425-60 (score: 0.050)
  • ZDB-GENE-001212-1 (score: 0.050)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0190054 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0052451 (score: 1.000; bootstrap: 97%)
  • FBgn0004551 (score: 0.086)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA16915-PA (score: 1.000; bootstrap: 99%)
  • GA17643-PA (score: 0.097)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000018880 (score: 1.000; bootstrap: 96%)
  • ENSGALP00000008931 (score: 0.586)
  • ENSGALP00000033967 (score: 0.123)
  • ENSGALP00000002373 (score: 0.113)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000329664 (score: 1.000; bootstrap: 98%)
  • ENSP00000262429 (score: 0.579)
  • ENSP00000353072 (score: 0.118)
  • ENSP00000324892 (score: 0.114)
  • ENSP00000349595 (score: 0.102)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000006808 (score: 1.000; bootstrap: 91%)
  • ENSMMUP00000017811 (score: 0.244)
  • ENSMMUP00000024948 (score: 0.066)
  • ENSMMUP00000010829 (score: 0.064)
  • ENSMMUP00000030965 (score: 0.051)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000015030 (score: 1.000; bootstrap: 96%)
  • ENSMODP00000005946 (score: 0.592)
  • ENSMODP00000014631 (score: 0.114)
  • ENSMODP00000019420 (score: 0.098)

From Inparanoid:20070104

Mus musculus

  • MGI:1889008 (score: 1.000; bootstrap: 98%)
  • MGI:1916297 (score: 0.538)
  • MGI:1194503 (score: 0.113)
  • MGI:88110 (score: 0.111)
  • MGI:105058 (score: 0.100)

From Inparanoid:20070104

Oryza gramene

  • O04938 (score: 1.000; bootstrap: 54%)
  • Q8H8W1 (score: 0.789)
  • Q4PKC7 (score: 0.688)
  • Q9LIV9 (score: 0.645)
  • Q9LM01 (score: 0.541)
  • Q94IM7 (score: 0.436)
  • Q94IM6 (score: 0.361)
  • Q851E2 (score: 0.122)
  • Q94IM8 (score: 0.074)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000026522 (score: 1.000; bootstrap: 97%)
  • ENSPTRP00000014362 (score: 0.336)
  • ENSPTRP00000009231 (score: 0.113)
  • ENSPTRP00000013574 (score: 0.067)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000045953 (score: 1.000; bootstrap: 96%)
  • ENSRNOP00000024318 (score: 0.120)
  • ENSRNOP00000024347 (score: 0.101)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YGL167C (score: 1.000; bootstrap: 56%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC31E12c (score: 1.000; bootstrap: 86%)
  • SPBC8396 (score: 0.053)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000132852 (score: 1.000; bootstrap: 95%)
  • NEWSINFRUP00000178399 (score: 0.127)
  • NEWSINFRUP00000171448 (score: 0.109)
  • NEWSINFRUP00000179512 (score: 0.099)
  • NEWSINFRUP00000181291 (score: 0.087)
  • NEWSINFRUP00000167162 (score: 0.085)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00021814001 (score: 1.000; bootstrap: 93%)
  • GSTENP00016251001 (score: 0.744)
  • GSTENP00021597001 (score: 0.729)
  • GSTENP00035054001 (score: 0.467)
  • GSTENP00035053001 (score: 0.125)
  • GSTENP00000700001 (score: 0.098)
  • GSTENP00009710001 (score: 0.079)
  • GSTENP00002360001 (score: 0.079)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000004976 (score: 1.000; bootstrap: 94%)
  • ENSXETP00000029152 (score: 0.567)
  • ENSXETP00000045258 (score: 0.112)
  • ENSXETP00000021344 (score: 0.108)
  • ENSXETP00000039487 (score: 0.108)
  • ENSXETP00000051396 (score: 0.060)
  • ENSXETP00000043952 (score: 0.052)

From Inparanoid:20070104

Shigella flexneri

MGTA

From SHIGELLACYC

E. coli O157

MGTA

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00702 haloacid dehalogenase-like hydrolase

Pfam (EcoliWiki Page)

PF00122 E1-E2 ATPase

Pfam (EcoliWiki Page)

PF00690 Cation transporter/ATPase, N-terminus

Panther (EcoliWiki Page)

PTHR24093:SF62

Superfamily (EcoliWiki Page)

SUPERFAMILY:56784

Superfamily (EcoliWiki Page)

SUPERFAMILY:81653

Superfamily (EcoliWiki Page)

SUPERFAMILY:81660

Superfamily (EcoliWiki Page)

SUPERFAMILY:81665

EcoCyc

EcoCyc:EG12525

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12525

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002316

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2416

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0013883

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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