eno:Evolution: Difference between revisions

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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="G46abe83fa2985"  class=" tableEdit Evolution_homologs_table" 
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!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Anopheles gambiae''   
''Anopheles gambiae''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Apis mellifera''   
''Apis mellifera''   
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From Inparanoid:20070104  
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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From Inparanoid:20070104  
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''Bos taurus''   
''Bos taurus''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Canis familiaris''   
''Canis familiaris''   
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From Inparanoid:20070104  
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''Ciona intestinalis''   
''Ciona intestinalis''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Danio rerio''   
''Danio rerio''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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From Inparanoid:20070104  
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''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
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From Inparanoid:20070104  
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''Gallus gallus''   
''Gallus gallus''   
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''Homo sapiens''   
''Homo sapiens''   
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''Macaca mulatta''   
''Macaca mulatta''   
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''Monodelphis domestica''   
''Monodelphis domestica''   
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From Inparanoid:20070104  
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''Mus musculus''   
''Mus musculus''   
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''Oryza gramene''   
''Oryza gramene''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Pan troglodytes''   
''Pan troglodytes''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Rattus norvegicus''   
''Rattus norvegicus''   
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From Inparanoid:20070104  
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''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
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''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
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''Takifugu rubripes''   
''Takifugu rubripes''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Shigella flexneri''   
''Shigella flexneri''   
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From SHIGELLACYC  
From SHIGELLACYC  
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''E. coli'' O157
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ENO
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From ECOO157CYC
 
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_417259&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_417259&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


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|- {{table_heading_style}}
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF03952 PF03952  Enolase, N-terminal domain]
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|-
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00113 PF00113  Enolase, C-terminal TIM barrel domain]
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|-
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=51604 SUPERFAMILY:51604]
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|-
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11902:SF0 PTHR11902:SF0]
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|-  
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
|
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF03952 PFAM:PF03952]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=54826 SUPERFAMILY:54826]
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[[EcoCyc]]
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EcoCyc:EG10258
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG10258
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[[RegulonDB]]
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RegulonDB:ECK120000252
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[[EchoBASE]]
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EchoBASE:EB0254
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[[ASAP]]
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ASAP:ABE-0009110
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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<protect><!--Families_notes--></protect>
<protect><!--Families_notes--></protect>
===Notes===
===Notes===
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==References==
==References==
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{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
[[Category:Genes with homologs in Anopheles gambiae ]][[Category:Genes with homologs in Apis mellifera ]][[Category:Genes with homologs in Arabidopsis thaliana ]][[Category:Genes with homologs in Bos taurus ]][[Category:Genes with homologs in Caenorhabditis briggsae ]][[Category:Genes with homologs in Caenorhabditis elegans ]][[Category:Genes with homologs in Canis familiaris ]][[Category:Genes with homologs in Ciona intestinalis ]][[Category:Genes with homologs in Danio rerio ]][[Category:Genes with homologs in Dictyostelium discoideum ]][[Category:Genes with homologs in Drosophila melanogaster ]][[Category:Genes with homologs in Drosophila pseudoobscura ]][[Category:Genes with homologs in Gallus gallus ]][[Category:Genes with homologs in Homo sapiens ]][[Category:Genes with homologs in Macaca mulatta ]][[Category:Genes with homologs in Monodelphis domestica ]][[Category:Genes with homologs in Mus musculus ]][[Category:Genes with homologs in Oryza gramene ]][[Category:Genes with homologs in Pan troglodytes ]][[Category:Genes with homologs in Rattus norvegicus ]][[Category:Genes with homologs in Saccharomyces cerevisiae ]][[Category:Genes with homologs in Schizosaccharomyces pombe ]][[Category:Genes with homologs in Takifugu rubripes ]][[Category:Genes with homologs in Tetraodon nigroviridis ]][[Category:Genes with homologs in Xenopus tropicalis ]][[Category:Genes with homologs in Shigella flexneri ]][[Category:Genes with homologs in E. coli O157]]</noinclude>
===Categories===
{{BacktoTop}}
[[Category:Genes with homologs in Anopheles gambiae ]]
[[Category:Genes with homologs in Apis mellifera ]]
[[Category:Genes with homologs in Arabidopsis thaliana ]]
[[Category:Genes with homologs in Bos taurus ]]
[[Category:Genes with homologs in Caenorhabditis briggsae ]]
[[Category:Genes with homologs in Caenorhabditis elegans ]]
[[Category:Genes with homologs in Canis familiaris ]]
[[Category:Genes with homologs in Ciona intestinalis ]]
[[Category:Genes with homologs in Danio rerio ]]
[[Category:Genes with homologs in Dictyostelium discoideum ]]
[[Category:Genes with homologs in Drosophila melanogaster ]]
[[Category:Genes with homologs in Drosophila pseudoobscura ]]
[[Category:Genes with homologs in Gallus gallus ]]
[[Category:Genes with homologs in Homo sapiens ]]
[[Category:Genes with homologs in Macaca mulatta ]]
[[Category:Genes with homologs in Monodelphis domestica ]]
[[Category:Genes with homologs in Mus musculus ]]
[[Category:Genes with homologs in Oryza gramene ]]
[[Category:Genes with homologs in Pan troglodytes ]]
[[Category:Genes with homologs in Rattus norvegicus ]]
[[Category:Genes with homologs in Saccharomyces cerevisiae ]]
[[Category:Genes with homologs in Schizosaccharomyces pombe ]]
[[Category:Genes with homologs in Takifugu rubripes ]]
[[Category:Genes with homologs in Tetraodon nigroviridis ]]
[[Category:Genes with homologs in Xenopus tropicalis ]]
[[Category:Genes with homologs in Shigella flexneri ]]
[[Category:Genes with homologs in E. coli O157]]

Latest revision as of 08:35, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000018531 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000015000 (score: 1.000; bootstrap: 100%)
  • ENSAPMP00000026533 (score: 0.090)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT2G36530 (score: 1.000; bootstrap: 100%)
  • AT1G74030 (score: 0.340)
  • AT2G29560 (score: 0.145)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000007278 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000017839 (score: 0.677)
  • ENSBTAP00000014978 (score: 0.659)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00026116 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00011884 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000023264 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000021430 (score: 0.701)
  • ENSCAFP00000029158 (score: 0.232)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000015064 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040426-1651 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-2591 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-2935 (score: 0.828)
  • ZDB-CDNA-040625-241 (score: 0.823)
  • ZDB-GENE-030131-6048 (score: 0.823)
  • ZDB-GENE-031006-5 (score: 0.694)
  • ZDB-CDNA-050703-7 (score: 0.689)
  • ZDB-CDNA-040704-27 (score: 0.637)
  • ZDB-GENE-040704-27 (score: 0.637)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0231355 (score: 1.000; bootstrap: 100%)
  • DDB0231356 (score: 0.193)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0000579 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA14598-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000023398 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000003737 (score: 0.434)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000324105 (score: 1.000; bootstrap: 100%)
  • ENSP00000229277 (score: 0.702)
  • ENSP00000351745 (score: 0.698)
  • ENSP00000352320 (score: 0.337)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000012348 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000030227 (score: 0.727)
  • ENSMMUP00000015635 (score: 0.442)
  • ENSMMUP00000015794 (score: 0.111)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000006501 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000011894 (score: 0.619)
  • ENSMODP00000011875 (score: 0.472)
  • ENSMODP00000021192 (score: 0.260)

From Inparanoid:20070104

Mus musculus

  • MGI:95395 (score: 1.000; bootstrap: 100%)
  • MGI:95393 (score: 0.721)
  • MGI:95394 (score: 0.700)

From Inparanoid:20070104

Oryza gramene

  • Q7XBE4 (score: 1.000; bootstrap: 99%)
  • Q42971 (score: 0.998)
  • Q7XAS6 (score: 0.927)
  • P42895 (score: 0.927)
  • Q8LM12 (score: 0.885)
  • Q5VNT9 (score: 0.841)
  • P26301 (score: 0.841)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000014708 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000000207 (score: 0.698)
  • ENSPTRP00000039421 (score: 0.329)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000005612 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000005601 (score: 0.710)
  • ENSRNOP00000024106 (score: 0.710)
  • ENSRNOP00000038380 (score: 0.645)
  • ENSRNOP00000044836 (score: 0.506)
  • ENSRNOP00000036133 (score: 0.267)
  • ENSRNOP00000043583 (score: 0.211)
  • ENSRNOP00000047889 (score: 0.188)
  • ENSRNOP00000002063 (score: 0.153)
  • ENSRNOP00000002064 (score: 0.125)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YGR254W (score: 1.000; bootstrap: 100%)
  • YHR174W (score: 0.922)
  • YPL281C (score: 0.503)
  • YOR393W (score: 0.503)
  • YMR323W (score: 0.503)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC18151 (score: 1.000; bootstrap: 100%)
  • SPBPB21E71c (score: 0.434)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000150208 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000131536 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000156170 (score: 0.654)
  • NEWSINFRUP00000136862 (score: 0.635)
  • NEWSINFRUP00000169571 (score: 0.330)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00027422001 (score: 1.000; bootstrap: 100%)
  • GSTENP00003809001 (score: 0.685)
  • GSTENP00004994001 (score: 0.537)
  • GSTENP00009644001 (score: 0.479)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000026001 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Shigella flexneri

ENO

From SHIGELLACYC

E. coli O157

ENO

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF03952 Enolase, N-terminal domain

Pfam (EcoliWiki Page)

PF00113 Enolase, C-terminal TIM barrel domain

Superfamily (EcoliWiki Page)

SUPERFAMILY:51604

Panther (EcoliWiki Page)

PTHR11902:SF0

Superfamily (EcoliWiki Page)

SUPERFAMILY:54826

EcoCyc

EcoCyc:EG10258

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10258

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000252

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0254

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0009110

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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