fcl:Evolution: Difference between revisions

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{|  id="X46abd08204974"  class=" tableEdit Evolution_homologs_table" 
|- {{table heading style}}
|- {{table heading style}}
!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
|-
|-  
|
|
''Anopheles gambiae''   
''Anopheles gambiae''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Canis familiaris''   
''Canis familiaris''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Ciona intestinalis''   
''Ciona intestinalis''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Danio rerio''   
''Danio rerio''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Gallus gallus''   
''Gallus gallus''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Homo sapiens''   
''Homo sapiens''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Macaca mulatta''   
''Macaca mulatta''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Monodelphis domestica''   
''Monodelphis domestica''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Mus musculus''   
''Mus musculus''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Oryza gramene''   
''Oryza gramene''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Pan troglodytes''   
''Pan troglodytes''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
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''Rattus norvegicus''   
''Rattus norvegicus''   
Line 161: Line 166:
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
|
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''Takifugu rubripes''   
''Takifugu rubripes''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Shigella flexneri''   
''Shigella flexneri''   
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From SHIGELLACYC  
From SHIGELLACYC  
|-class='sortbottom'
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|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.48077.X46abd08204974&page=48077&pagename={{FULLPAGENAMEE}} edit table] || ||
|
''E. coli'' O157
|
WCAG
|
From ECOO157CYC
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.48077.X46abd08204974&page=48077&pagename={{FULLPAGENAMEE}}&type=&template=Evolution_homologs_table edit table]</span> || ||
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{{Evolution_homologs_table_help}}


===Do-It-Yourself Web Tools===
<protect><!--Families_notes--></protect>
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_416556&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
 
<protect><!--Homology_notes--></protect>
===Notes===
===Notes===


==Families==
==Families==
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{|  id="V4c604e0b98b24"  class=" tableEdit Evolution_families_table" 
|- {{table heading style}}
|- {{table heading style}}
!Organism!!Homologs (Statistics)!!Comments
!|Database!!Accession!!Notes
|-
|-  
|
|
''Anopheles gambiae'' 
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
|
* ENSANGP00000010445 (score: 1.000; bootstrap: 100%)
[http://pfam.janelia.org/family/PF01370 PF01370  NAD dependent epimerase/dehydratase family]
|
|
From Inparanoid:20070104
   
|-
 
|
|- class="tableEdit_footer"
''Arabidopsis thaliana''  
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.48077.V4c604e0b98b24&page=48077&pagename={{FULLPAGENAMEE}}&type=0&template=Evolution_families_table edit table]</span> || ||
|
* AT1G17890 (score: 1.000; bootstrap: 100%)
* AT1G73250 (score: 0.704)
|
From Inparanoid:20070104
|-
|
''Caenorhabditis briggsae'' 
|
* WBGene00036425 (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Caenorhabditis elegans'' 
|
* WBGene00019813 (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Canis familiaris'' 
|
* ENSCAFP00000001915 (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Ciona intestinalis'' 
|
* ENSCINP00000011654 (score: 1.000; bootstrap: 100%)
* ENSCINP00000018387 (score: 0.489)
|
From Inparanoid:20070104
|-
|
''Danio rerio'' 
|
* ZDB-GENE-040801-35 (score: 1.000; bootstrap: 100%)
* ZDB-CDNA-040801-38 (score: 1.000; bootstrap: 100%)
* ZDB-CDNA-041212-49 (score: 0.784)
* ZDB-GENE-041212-45 (score: 0.784)
* ZDB-CDNA-050417-318 (score: 0.501)
* ZDB-GENE-050417-317 (score: 0.501)
|
From Inparanoid:20070104
|-
|
''Dictyostelium discoideum'' 
|
* DDB0190865 (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Drosophila melanogaster'' 
|
* FBgn0034794 (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Drosophila pseudoobscura'' 
|
* GA17480-PA (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Gallus gallus'' 
|
* ENSGALP00000025935 (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Homo sapiens'' 
|
* ENSP00000323092 (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Macaca mulatta'' 
|
* ENSMMUP00000019242 (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Monodelphis domestica'' 
|
* ENSMODP00000013999 (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Mus musculus'' 
|
* MGI:98857 (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Oryza gramene'' 
|
* Q67WR2 (score: 1.000; bootstrap: 100%)
* Q67WR5 (score: 0.173)
|
From Inparanoid:20070104
|-
|
''Pan troglodytes'' 
|
* ENSPTRP00000035327 (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Rattus norvegicus'' 
|
* ENSRNOP00000012306 (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Takifugu rubripes'' 
|
* NEWSINFRUP00000131352 (score: 1.000; bootstrap: 100%)
* NEWSINFRUP00000158315 (score: 0.530)
|
From Inparanoid:20070104
|-
|
''Tetraodon nigroviridis'' 
|
* GSTENP00015678001 (score: 1.000; bootstrap: 100%)
* GSTENP00015676001 (score: 0.669)
|
From Inparanoid:20070104
|-
|
''Xenopus tropicalis'' 
|
* ENSXETP00000023544 (score: 1.000; bootstrap: 91%)
|
From Inparanoid:20070104
|-
|
''Shigella flexneri'' 
|
WCAG
|
From SHIGELLACYC
|-
|
''E. coli'' O157
|
WCAG
|
From ECOO157CYC
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.48077.X46abd08204974&page=48077&pagename={{FULLPAGENAMEE}} edit table] || ||
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{{Evolution_families_table_help}}
<protect><!--Families_notes--></protect>
<protect><!--Families_notes--></protect>
===Notes===
===Notes===


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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
[[Category:Genes with homologs in Anopheles gambiae ]][[Category:Genes with homologs in Arabidopsis thaliana ]][[Category:Genes with homologs in Caenorhabditis briggsae ]][[Category:Genes with homologs in Caenorhabditis elegans ]][[Category:Genes with homologs in Canis familiaris ]][[Category:Genes with homologs in Ciona intestinalis ]][[Category:Genes with homologs in Danio rerio ]][[Category:Genes with homologs in Dictyostelium discoideum ]][[Category:Genes with homologs in Drosophila melanogaster ]][[Category:Genes with homologs in Drosophila pseudoobscura ]][[Category:Genes with homologs in Gallus gallus ]][[Category:Genes with homologs in Homo sapiens ]][[Category:Genes with homologs in Macaca mulatta ]][[Category:Genes with homologs in Monodelphis domestica ]][[Category:Genes with homologs in Mus musculus ]][[Category:Genes with homologs in Oryza gramene ]][[Category:Genes with homologs in Pan troglodytes ]][[Category:Genes with homologs in Rattus norvegicus ]][[Category:Genes with homologs in Takifugu rubripes ]][[Category:Genes with homologs in Tetraodon nigroviridis ]][[Category:Genes with homologs in Xenopus tropicalis ]][[Category:Genes with homologs in Shigella flexneri ]][[Category:Genes with homologs in E. coli O157]]</noinclude>
===Categories===
{{BacktoTop}}
[[Category:Genes with homologs in Anopheles gambiae ]]
[[Category:Genes with homologs in Arabidopsis thaliana ]]
[[Category:Genes with homologs in Caenorhabditis briggsae ]]
[[Category:Genes with homologs in Caenorhabditis elegans ]]
[[Category:Genes with homologs in Canis familiaris ]]
[[Category:Genes with homologs in Ciona intestinalis ]]
[[Category:Genes with homologs in Danio rerio ]]
[[Category:Genes with homologs in Dictyostelium discoideum ]]
[[Category:Genes with homologs in Drosophila melanogaster ]]
[[Category:Genes with homologs in Drosophila pseudoobscura ]]
[[Category:Genes with homologs in Gallus gallus ]]
[[Category:Genes with homologs in Homo sapiens ]]
[[Category:Genes with homologs in Macaca mulatta ]]
[[Category:Genes with homologs in Monodelphis domestica ]]
[[Category:Genes with homologs in Mus musculus ]]
[[Category:Genes with homologs in Oryza gramene ]]
[[Category:Genes with homologs in Pan troglodytes ]]
[[Category:Genes with homologs in Rattus norvegicus ]]
[[Category:Genes with homologs in Takifugu rubripes ]]
[[Category:Genes with homologs in Tetraodon nigroviridis ]]
[[Category:Genes with homologs in Xenopus tropicalis ]]
[[Category:Genes with homologs in Shigella flexneri ]]
[[Category:Genes with homologs in E. coli O157]]

Latest revision as of 22:16, 15 August 2011

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000010445 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT1G17890 (score: 1.000; bootstrap: 100%)
  • AT1G73250 (score: 0.704)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00036425 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00019813 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000001915 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000011654 (score: 1.000; bootstrap: 100%)
  • ENSCINP00000018387 (score: 0.489)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040801-35 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040801-38 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-041212-49 (score: 0.784)
  • ZDB-GENE-041212-45 (score: 0.784)
  • ZDB-CDNA-050417-318 (score: 0.501)
  • ZDB-GENE-050417-317 (score: 0.501)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0190865 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0034794 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA17480-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000025935 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000323092 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000019242 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000013999 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:98857 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • Q67WR2 (score: 1.000; bootstrap: 100%)
  • Q67WR5 (score: 0.173)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000035327 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000012306 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000131352 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000158315 (score: 0.530)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00015678001 (score: 1.000; bootstrap: 100%)
  • GSTENP00015676001 (score: 0.669)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000023544 (score: 1.000; bootstrap: 91%)

From Inparanoid:20070104

Shigella flexneri

WCAG

From SHIGELLACYC

E. coli O157

WCAG

From ECOO157CYC

edit table


Notes

Families

[back to top]


See Help:Evolution_families for help entering or editing information in this section of EcoliWiki.

Database Accession Notes

Pfam (EcoliWiki Page)

PF01370 NAD dependent epimerase/dehydratase family


edit table


Notes

Links

[back to top]



References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

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