aqpZ:Evolution: Difference between revisions

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!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Anopheles gambiae''   
''Anopheles gambiae''   
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''Apis mellifera''   
''Apis mellifera''   
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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''Bos taurus''   
''Bos taurus''   
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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''Canis familiaris''   
''Canis familiaris''   
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''Danio rerio''   
''Danio rerio''   
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
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''Gallus gallus''   
''Gallus gallus''   
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''Homo sapiens''   
''Homo sapiens''   
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''Macaca mulatta''   
''Macaca mulatta''   
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''Monodelphis domestica''   
''Monodelphis domestica''   
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''Mus musculus''   
''Mus musculus''   
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''Oryza gramene''   
''Oryza gramene''   
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''Pan troglodytes''   
''Pan troglodytes''   
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''Rattus norvegicus''   
''Rattus norvegicus''   
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''Takifugu rubripes''   
''Takifugu rubripes''   
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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''Shigella flexneri''   
''Shigella flexneri''   
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From SHIGELLACYC  
From SHIGELLACYC  
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''E. coli'' O157
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AQPZ
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From ECOO157CYC
 
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_415396&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_415396&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00230 PFAM:PF00230]
[http://pfam.janelia.org/family/PF00230 PF00230 Major intrinsic protein]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR19139:SF21 PTHR19139:SF21]
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|-
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=81338 SUPERFAMILY:81338]
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[[EcoCyc]]
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EcoCyc:EG13270
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG13270
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120002435
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB3055
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0002976
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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<protect><!--Families_notes--></protect>
<protect><!--Families_notes--></protect>
===Notes===
===Notes===
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==References==
==References==
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{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
[[Category:Genes with homologs in Anopheles gambiae ]][[Category:Genes with homologs in Apis mellifera ]][[Category:Genes with homologs in Arabidopsis thaliana ]][[Category:Genes with homologs in Bos taurus ]][[Category:Genes with homologs in Caenorhabditis briggsae ]][[Category:Genes with homologs in Caenorhabditis elegans ]][[Category:Genes with homologs in Canis familiaris ]][[Category:Genes with homologs in Danio rerio ]][[Category:Genes with homologs in Drosophila melanogaster ]][[Category:Genes with homologs in Drosophila pseudoobscura ]][[Category:Genes with homologs in Gallus gallus ]][[Category:Genes with homologs in Homo sapiens ]][[Category:Genes with homologs in Macaca mulatta ]][[Category:Genes with homologs in Monodelphis domestica ]][[Category:Genes with homologs in Mus musculus ]][[Category:Genes with homologs in Oryza gramene ]][[Category:Genes with homologs in Pan troglodytes ]][[Category:Genes with homologs in Rattus norvegicus ]][[Category:Genes with homologs in Takifugu rubripes ]][[Category:Genes with homologs in Tetraodon nigroviridis ]][[Category:Genes with homologs in Xenopus tropicalis ]][[Category:Genes with homologs in Shigella flexneri ]][[Category:Genes with homologs in E. coli O157]]</noinclude>
===Categories===
{{BacktoTop}}
[[Category:Genes with homologs in Anopheles gambiae ]]
[[Category:Genes with homologs in Apis mellifera ]]
[[Category:Genes with homologs in Arabidopsis thaliana ]]
[[Category:Genes with homologs in Bos taurus ]]
[[Category:Genes with homologs in Caenorhabditis briggsae ]]
[[Category:Genes with homologs in Caenorhabditis elegans ]]
[[Category:Genes with homologs in Canis familiaris ]]
[[Category:Genes with homologs in Danio rerio ]]
[[Category:Genes with homologs in Drosophila melanogaster ]]
[[Category:Genes with homologs in Drosophila pseudoobscura ]]
[[Category:Genes with homologs in Gallus gallus ]]
[[Category:Genes with homologs in Homo sapiens ]]
[[Category:Genes with homologs in Macaca mulatta ]]
[[Category:Genes with homologs in Monodelphis domestica ]]
[[Category:Genes with homologs in Mus musculus ]]
[[Category:Genes with homologs in Oryza gramene ]]
[[Category:Genes with homologs in Pan troglodytes ]]
[[Category:Genes with homologs in Rattus norvegicus ]]
[[Category:Genes with homologs in Takifugu rubripes ]]
[[Category:Genes with homologs in Tetraodon nigroviridis ]]
[[Category:Genes with homologs in Xenopus tropicalis ]]
[[Category:Genes with homologs in Shigella flexneri ]]
[[Category:Genes with homologs in E. coli O157]]

Latest revision as of 08:31, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000016718 (score: 1.000; bootstrap: 92%)
  • ENSANGP00000016769 (score: 0.103)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000003796 (score: 1.000; bootstrap: 89%)
  • ENSAPMP00000032397 (score: 0.078)
  • ENSAPMP00000029623 (score: 0.070)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT4G19030 (score: 1.000; bootstrap: 84%)
  • AT4G18910 (score: 0.770)
  • AT2G34390 (score: 0.390)
  • AT5G37810 (score: 0.333)
  • AT5G37820 (score: 0.324)
  • AT1G31885 (score: 0.309)
  • AT4G10380 (score: 0.178)
  • AT1G80760 (score: 0.171)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000038149 (score: 1.000; bootstrap: 90%)
  • ENSBTAP00000011024 (score: 0.452)
  • ENSBTAP00000016984 (score: 0.329)
  • ENSBTAP00000013360 (score: 0.306)
  • ENSBTAP00000025341 (score: 0.194)
  • ENSBTAP00000000993 (score: 0.191)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00038598 (score: 1.000; bootstrap: 100%)
  • WBGene00031219 (score: 0.281)
  • WBGene00031159 (score: 0.262)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00000172 (score: 1.000; bootstrap: 100%)
  • WBGene00000174 (score: 0.307)
  • WBGene00000173 (score: 0.242)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000012304 (score: 1.000; bootstrap: 81%)
  • ENSCAFP00000000190 (score: 0.476)
  • ENSCAFP00000012296 (score: 0.392)
  • ENSCAFP00000026782 (score: 0.282)
  • ENSCAFP00000004614 (score: 0.256)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040724-152 (score: 1.000; bootstrap: 66%)
  • ZDB-CDNA-040808-6 (score: 1.000; bootstrap: 67%)
  • ZDB-GENE-030131-7764 (score: 0.225)
  • ZDB-CDNA-040425-3363 (score: 0.222)
  • ZDB-CDNA-040801-44 (score: 0.220)
  • ZDB-GENE-040801-41 (score: 0.220)
  • ZDB-CDNA-050706-35 (score: 0.203)
  • ZDB-GENE-050706-86 (score: 0.203)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0015872 (score: 1.000; bootstrap: 100%)
  • FBgn0033635 (score: 0.142)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA20580-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000008350 (score: 1.000; bootstrap: 75%)
  • ENSGALP00000016674 (score: 0.257)
  • ENSGALP00000024367 (score: 0.249)
  • ENSGALP00000013592 (score: 0.078)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000293599 (score: 1.000; bootstrap: 100%)
  • ENSP00000199280 (score: 0.564)
  • ENSP00000320247 (score: 0.406)
  • ENSP00000257979 (score: 0.393)
  • ENSP00000341388 (score: 0.283)
  • ENSP00000311165 (score: 0.247)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000013540 (score: 1.000; bootstrap: 99%)
  • ENSMMUP00000030182 (score: 0.491)
  • ENSMMUP00000019590 (score: 0.278)
  • ENSMMUP00000015441 (score: 0.275)
  • ENSMMUP00000028555 (score: 0.243)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000000292 (score: 1.000; bootstrap: 85%)
  • ENSMODP00000026878 (score: 0.311)

From Inparanoid:20070104

Mus musculus

  • MGI:106215 (score: 1.000; bootstrap: 87%)
  • MGI:1096865 (score: 0.535)
  • MGI:1341204 (score: 0.373)
  • MGI:96990 (score: 0.350)
  • MGI:107387 (score: 0.270)
  • MGI:103201 (score: 0.206)

From Inparanoid:20070104

Oryza gramene

  • Q40746 (score: 1.000; bootstrap: 68%)
  • Q6EUF4 (score: 1.000; bootstrap: 69%)
  • Q9ATN4 (score: 0.760)
  • Q5W6J2 (score: 0.564)
  • Q5QN31 (score: 0.464)
  • Q5Z9E2 (score: 0.413)
  • Q6Z2T3 (score: 0.187)
  • Q67WJ8 (score: 0.187)
  • Q9ATN2 (score: 0.182)
  • Q9ATN3 (score: 0.182)
  • Q9AT74 (score: 0.180)
  • Q9FW73 (score: 0.169)
  • Q9ATN1 (score: 0.159)
  • Q84S07 (score: 0.102)
  • Q7EYH7 (score: 0.095)
  • Q9ASI1 (score: 0.060)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000008403 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000008404 (score: 0.414)
  • ENSPTRP00000008676 (score: 0.396)
  • ENSPTRP00000008402 (score: 0.289)
  • ENSPTRP00000016898 (score: 0.279)
  • ENSPTRP00000032543 (score: 0.246)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000024102 (score: 1.000; bootstrap: 87%)
  • ENSRNOP00000044710 (score: 0.464)
  • ENSRNOP00000040588 (score: 0.320)
  • ENSRNOP00000004223 (score: 0.307)
  • ENSRNOP00000041720 (score: 0.233)
  • ENSRNOP00000015692 (score: 0.186)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000130258 (score: 1.000; bootstrap: 63%)
  • NEWSINFRUP00000161827 (score: 0.260)
  • NEWSINFRUP00000127844 (score: 0.245)
  • NEWSINFRUP00000162705 (score: 0.206)
  • NEWSINFRUP00000127840 (score: 0.105)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00023672001 (score: 1.000; bootstrap: 69%)
  • GSTENP00028132001 (score: 0.869)
  • GSTENP00002753001 (score: 0.625)
  • GSTENP00016124001 (score: 0.270)
  • GSTENP00028331001 (score: 0.236)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000047158 (score: 1.000; bootstrap: 79%)
  • ENSXETP00000043976 (score: 0.426)
  • ENSXETP00000015130 (score: 0.262)
  • ENSXETP00000012520 (score: 0.235)
  • ENSXETP00000022885 (score: 0.131)

From Inparanoid:20070104

Shigella flexneri

AQPZ

From SHIGELLACYC

E. coli O157

AQPZ

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00230 Major intrinsic protein

Panther (EcoliWiki Page)

PTHR19139:SF21

Superfamily (EcoliWiki Page)

SUPERFAMILY:81338

EcoCyc

EcoCyc:EG13270

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13270

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002435

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3055

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0002976

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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