ybjS:Evolution: Difference between revisions

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{|  id="O46abb0885113b"  class=" tableEdit Evolution_homologs_table" 
|- {{table heading style}}
|- {{table heading style}}
!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
|-
|-  
|
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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|-  
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''Bos taurus''   
''Bos taurus''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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|-  
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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From Inparanoid:20070104  
|-
|-  
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''Canis familiaris''   
''Canis familiaris''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Danio rerio''   
''Danio rerio''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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|-  
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''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
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From Inparanoid:20070104  
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|-  
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''Gallus gallus''   
''Gallus gallus''   
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From Inparanoid:20070104  
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|-  
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''Homo sapiens''   
''Homo sapiens''   
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From Inparanoid:20070104  
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''Macaca mulatta''   
''Macaca mulatta''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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|-  
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''Monodelphis domestica''   
''Monodelphis domestica''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Mus musculus''   
''Mus musculus''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Pan troglodytes''   
''Pan troglodytes''   
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From Inparanoid:20070104  
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|-  
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''Rattus norvegicus''   
''Rattus norvegicus''   
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''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
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''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
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From Inparanoid:20070104  
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''Takifugu rubripes''   
''Takifugu rubripes''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
|-
|-  
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''Shigella flexneri''   
''Shigella flexneri''   
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From SHIGELLACYC  
From SHIGELLACYC  
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''E. coli'' O157
|
Z1102
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From ECOO157CYC
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.45705.O46abb0885113b&page=45705&pagename={{FULLPAGENAMEE}}&type=&template=Evolution_homologs_table edit table]</span> || ||
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{{Evolution_homologs_table_help}}


===Do-It-Yourself Web Tools===
<protect><!--Families_notes--></protect>
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_415389&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
 
<protect><!--Homology_notes--></protect>
===Notes===
===Notes===


==Families==
==Families==
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{|  id="R4c604f03b51ec"  class=" tableEdit Evolution_families_table" 
|- {{table heading style}}
|- {{table heading style}}
!Organism!!Homologs (Statistics)!!Comments
!|Database!!Accession!!Notes
|-
|-  
|
|
''Arabidopsis thaliana'' 
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
* AT1G47290 (score: 1.000; bootstrap: 92%)
* AT2G26260 (score: 0.772)
* AT2G43420 (score: 0.245)
* AT2G33630 (score: 0.091)  
|
|
From Inparanoid:20070104
[http://pfam.janelia.org/family/PF01370 PF01370  NAD dependent epimerase/dehydratase family]
|-
|
|
''Bos taurus''  
   
|
 
* ENSBTAP00000012167 (score: 1.000; bootstrap: 100%)
|- class="tableEdit_footer"
* ENSBTAP00000024475 (score: 0.127)
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.45705.R4c604f03b51ec&page=45705&pagename={{FULLPAGENAMEE}}&type=0&template=Evolution_families_table edit table]</span> || ||
* ENSBTAP00000017350 (score: 0.071)
* ENSBTAP00000003028 (score: 0.059)
|
From Inparanoid:20070104
|-
|
''Caenorhabditis elegans'' 
|
* WBGene00022498 (score: 1.000; bootstrap: 100%)
* WBGene00022616 (score: 0.350)
* WBGene00012394 (score: 0.182)
|
From Inparanoid:20070104
|-
|
''Canis familiaris'' 
|
* ENSCAFP00000028277 (score: 1.000; bootstrap: 100%)
* ENSCAFP00000029600 (score: 0.111)
* ENSCAFP00000024667 (score: 0.057)
|
From Inparanoid:20070104
|-
|
''Danio rerio'' 
|
* ZDB-GENE-050417-163 (score: 1.000; bootstrap: 100%)
* ZDB-CDNA-050417-164 (score: 1.000; bootstrap: 100%)
* ZDB-GENE-051120-63 (score: 0.142)
* ZDB-CDNA-050703-12 (score: 0.072)
* ZDB-GENE-030828-2 (score: 0.072)
|
From Inparanoid:20070104
|-
|
''Dictyostelium discoideum'' 
|
* DDB0205620 (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Gallus gallus'' 
|
* ENSGALP00000031700 (score: 1.000; bootstrap: 100%)
* ENSGALP00000008742 (score: 0.149)
* ENSGALP00000011268 (score: 0.083)
|
From Inparanoid:20070104
|-
|
''Homo sapiens'' 
|
* ENSP00000276346 (score: 1.000; bootstrap: 100%)
* ENSP00000332407 (score: 0.120)
|
From Inparanoid:20070104
|-
|
''Macaca mulatta'' 
|
* ENSMMUP00000017308 (score: 1.000; bootstrap: 100%)
* ENSMMUP00000026808 (score: 0.110)
|
From Inparanoid:20070104
|-
|
''Monodelphis domestica'' 
|
* ENSMODP00000007345 (score: 1.000; bootstrap: 100%)
* ENSMODP00000018953 (score: 0.168)
* ENSMODP00000009558 (score: 0.115)
* ENSMODP00000002133 (score: 0.052)
* ENSMODP00000006650 (score: 0.050)
|
From Inparanoid:20070104
|-
|
''Mus musculus'' 
|
* MGI:1099438 (score: 1.000; bootstrap: 100%)
* MGI:1921282 (score: 0.125)
* MGI:3645276 (score: 0.083)
* MGI:2141879 (score: 0.077)
|
From Inparanoid:20070104
|-
|
''Pan troglodytes'' 
|
* ENSPTRP00000014331 (score: 1.000; bootstrap: 100%)
* ENSPTRP00000002009 (score: 0.085)
* ENSPTRP00000013710 (score: 0.080)
* ENSPTRP00000002008 (score: 0.080)
|
From Inparanoid:20070104
|-
|
''Rattus norvegicus'' 
|
* ENSRNOP00000022985 (score: 1.000; bootstrap: 100%)
* ENSRNOP00000037042 (score: 0.061)
* ENSRNOP00000026306 (score: 0.051)
|
From Inparanoid:20070104
|-
|
''Saccharomyces cerevisiae'' 
|
* YGL001C (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Schizosaccharomyces pombe'' 
|
* SPBC3F62c (score: 1.000; bootstrap: 100%)
|
From Inparanoid:20070104
|-
|
''Takifugu rubripes'' 
|
* NEWSINFRUP00000138191 (score: 1.000; bootstrap: 100%)
* NEWSINFRUP00000155379 (score: 0.142)
|
From Inparanoid:20070104
|-
|
''Tetraodon nigroviridis'' 
|
* GSTENP00017071001 (score: 1.000; bootstrap: 100%)
* GSTENP00008813001 (score: 0.145)
|
From Inparanoid:20070104
|-
|
''Xenopus tropicalis'' 
|
* ENSXETP00000039937 (score: 1.000; bootstrap: 100%)
* ENSXETP00000007732 (score: 0.137)
|
From Inparanoid:20070104
|-
|
''Shigella flexneri'' 
|
S0864
|
From SHIGELLACYC
|-
|
''E. coli'' O157
|
Z1102
|
From ECOO157CYC
|-class='sortbottom'
|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.45705.O46abb0885113b&page=45705&pagename={{FULLPAGENAMEE}} edit table] || ||
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{{Evolution_families_table_help}}
<protect><!--Families_notes--></protect>
<protect><!--Families_notes--></protect>
===Notes===
===Notes===


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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
[[Category:Genes with homologs in Arabidopsis thaliana ]][[Category:Genes with homologs in Bos taurus ]][[Category:Genes with homologs in Caenorhabditis elegans ]][[Category:Genes with homologs in Canis familiaris ]][[Category:Genes with homologs in Danio rerio ]][[Category:Genes with homologs in Dictyostelium discoideum ]][[Category:Genes with homologs in Gallus gallus ]][[Category:Genes with homologs in Homo sapiens ]][[Category:Genes with homologs in Macaca mulatta ]][[Category:Genes with homologs in Monodelphis domestica ]][[Category:Genes with homologs in Mus musculus ]][[Category:Genes with homologs in Pan troglodytes ]][[Category:Genes with homologs in Rattus norvegicus ]][[Category:Genes with homologs in Saccharomyces cerevisiae ]][[Category:Genes with homologs in Schizosaccharomyces pombe ]][[Category:Genes with homologs in Takifugu rubripes ]][[Category:Genes with homologs in Tetraodon nigroviridis ]][[Category:Genes with homologs in Xenopus tropicalis ]][[Category:Genes with homologs in Shigella flexneri ]][[Category:Genes with homologs in E. coli O157]]</noinclude>
===Categories===
{{BacktoTop}}
[[Category:Genes with homologs in Arabidopsis thaliana ]]
[[Category:Genes with homologs in Bos taurus ]]
[[Category:Genes with homologs in Caenorhabditis elegans ]]
[[Category:Genes with homologs in Canis familiaris ]]
[[Category:Genes with homologs in Danio rerio ]]
[[Category:Genes with homologs in Dictyostelium discoideum ]]
[[Category:Genes with homologs in Gallus gallus ]]
[[Category:Genes with homologs in Homo sapiens ]]
[[Category:Genes with homologs in Macaca mulatta ]]
[[Category:Genes with homologs in Monodelphis domestica ]]
[[Category:Genes with homologs in Mus musculus ]]
[[Category:Genes with homologs in Pan troglodytes ]]
[[Category:Genes with homologs in Rattus norvegicus ]]
[[Category:Genes with homologs in Saccharomyces cerevisiae ]]
[[Category:Genes with homologs in Schizosaccharomyces pombe ]]
[[Category:Genes with homologs in Takifugu rubripes ]]
[[Category:Genes with homologs in Tetraodon nigroviridis ]]
[[Category:Genes with homologs in Xenopus tropicalis ]]
[[Category:Genes with homologs in Shigella flexneri ]]
[[Category:Genes with homologs in E. coli O157]]

Latest revision as of 20:16, 16 August 2011

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Arabidopsis thaliana

  • AT1G47290 (score: 1.000; bootstrap: 92%)
  • AT2G26260 (score: 0.772)
  • AT2G43420 (score: 0.245)
  • AT2G33630 (score: 0.091)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000012167 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000024475 (score: 0.127)
  • ENSBTAP00000017350 (score: 0.071)
  • ENSBTAP00000003028 (score: 0.059)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00022498 (score: 1.000; bootstrap: 100%)
  • WBGene00022616 (score: 0.350)
  • WBGene00012394 (score: 0.182)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000028277 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000029600 (score: 0.111)
  • ENSCAFP00000024667 (score: 0.057)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-050417-163 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-050417-164 (score: 1.000; bootstrap: 100%)
  • ZDB-GENE-051120-63 (score: 0.142)
  • ZDB-CDNA-050703-12 (score: 0.072)
  • ZDB-GENE-030828-2 (score: 0.072)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0205620 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000031700 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000008742 (score: 0.149)
  • ENSGALP00000011268 (score: 0.083)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000276346 (score: 1.000; bootstrap: 100%)
  • ENSP00000332407 (score: 0.120)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000017308 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000026808 (score: 0.110)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000007345 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000018953 (score: 0.168)
  • ENSMODP00000009558 (score: 0.115)
  • ENSMODP00000002133 (score: 0.052)
  • ENSMODP00000006650 (score: 0.050)

From Inparanoid:20070104

Mus musculus

  • MGI:1099438 (score: 1.000; bootstrap: 100%)
  • MGI:1921282 (score: 0.125)
  • MGI:3645276 (score: 0.083)
  • MGI:2141879 (score: 0.077)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000014331 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000002009 (score: 0.085)
  • ENSPTRP00000013710 (score: 0.080)
  • ENSPTRP00000002008 (score: 0.080)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000022985 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000037042 (score: 0.061)
  • ENSRNOP00000026306 (score: 0.051)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YGL001C (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC3F62c (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000138191 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000155379 (score: 0.142)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00017071001 (score: 1.000; bootstrap: 100%)
  • GSTENP00008813001 (score: 0.145)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000039937 (score: 1.000; bootstrap: 100%)
  • ENSXETP00000007732 (score: 0.137)

From Inparanoid:20070104

Shigella flexneri

S0864

From SHIGELLACYC

E. coli O157

Z1102

From ECOO157CYC

edit table


Notes

Families

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See Help:Evolution_families for help entering or editing information in this section of EcoliWiki.

Database Accession Notes

Pfam (EcoliWiki Page)

PF01370 NAD dependent epimerase/dehydratase family


edit table


Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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