clcA:Evolution: Difference between revisions

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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="N46ab9a3e07e66"  class=" tableEdit Evolution_homologs_table" 
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!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Anopheles gambiae''   
''Anopheles gambiae''   
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''Apis mellifera''   
''Apis mellifera''   
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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''Bos taurus''   
''Bos taurus''   
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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''Canis familiaris''   
''Canis familiaris''   
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''Ciona intestinalis''   
''Ciona intestinalis''   
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''Danio rerio''   
''Danio rerio''   
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''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
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''Gallus gallus''   
''Gallus gallus''   
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''Homo sapiens''   
''Homo sapiens''   
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''Macaca mulatta''   
''Macaca mulatta''   
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''Monodelphis domestica''   
''Monodelphis domestica''   
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''Mus musculus''   
''Mus musculus''   
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''Oryza gramene''   
''Oryza gramene''   
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''Pan troglodytes''   
''Pan troglodytes''   
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''Rattus norvegicus''   
''Rattus norvegicus''   
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''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
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''Takifugu rubripes''   
''Takifugu rubripes''   
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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''Shigella flexneri''   
''Shigella flexneri''   
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From SHIGELLACYC  
From SHIGELLACYC  
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''E. coli'' O157
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YADQ
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From ECOO157CYC
 
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_414697&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_414697&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


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|- {{table_heading_style}}
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00654 PFAM:PF00654]
[http://pfam.janelia.org/family/PF00654 PF00654 Voltage gated chloride channel]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11689:SF14 PTHR11689:SF14]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=81340 SUPERFAMILY:81340]
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[[EcoCyc]]
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EcoCyc:EG12331
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG12331
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120002206
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB2235
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0000533
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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<protect><!--Families_notes--></protect>
<protect><!--Families_notes--></protect>
===Notes===
===Notes===
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==References==
==References==
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{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
[[Category:Genes with homologs in Anopheles gambiae ]][[Category:Genes with homologs in Apis mellifera ]][[Category:Genes with homologs in Arabidopsis thaliana ]][[Category:Genes with homologs in Bos taurus ]][[Category:Genes with homologs in Caenorhabditis briggsae ]][[Category:Genes with homologs in Caenorhabditis elegans ]][[Category:Genes with homologs in Canis familiaris ]][[Category:Genes with homologs in Ciona intestinalis ]][[Category:Genes with homologs in Danio rerio ]][[Category:Genes with homologs in Dictyostelium discoideum ]][[Category:Genes with homologs in Drosophila melanogaster ]][[Category:Genes with homologs in Drosophila pseudoobscura ]][[Category:Genes with homologs in Gallus gallus ]][[Category:Genes with homologs in Homo sapiens ]][[Category:Genes with homologs in Macaca mulatta ]][[Category:Genes with homologs in Monodelphis domestica ]][[Category:Genes with homologs in Mus musculus ]][[Category:Genes with homologs in Oryza gramene ]][[Category:Genes with homologs in Pan troglodytes ]][[Category:Genes with homologs in Rattus norvegicus ]][[Category:Genes with homologs in Schizosaccharomyces pombe ]][[Category:Genes with homologs in Takifugu rubripes ]][[Category:Genes with homologs in Tetraodon nigroviridis ]][[Category:Genes with homologs in Xenopus tropicalis ]][[Category:Genes with homologs in Shigella flexneri ]][[Category:Genes with homologs in E. coli O157]]</noinclude>
===Categories===
{{BacktoTop}}
[[Category:Genes with homologs in Anopheles gambiae ]]
[[Category:Genes with homologs in Apis mellifera ]]
[[Category:Genes with homologs in Arabidopsis thaliana ]]
[[Category:Genes with homologs in Bos taurus ]]
[[Category:Genes with homologs in Caenorhabditis briggsae ]]
[[Category:Genes with homologs in Caenorhabditis elegans ]]
[[Category:Genes with homologs in Canis familiaris ]]
[[Category:Genes with homologs in Ciona intestinalis ]]
[[Category:Genes with homologs in Danio rerio ]]
[[Category:Genes with homologs in Dictyostelium discoideum ]]
[[Category:Genes with homologs in Drosophila melanogaster ]]
[[Category:Genes with homologs in Drosophila pseudoobscura ]]
[[Category:Genes with homologs in Gallus gallus ]]
[[Category:Genes with homologs in Homo sapiens ]]
[[Category:Genes with homologs in Macaca mulatta ]]
[[Category:Genes with homologs in Monodelphis domestica ]]
[[Category:Genes with homologs in Mus musculus ]]
[[Category:Genes with homologs in Oryza gramene ]]
[[Category:Genes with homologs in Pan troglodytes ]]
[[Category:Genes with homologs in Rattus norvegicus ]]
[[Category:Genes with homologs in Schizosaccharomyces pombe ]]
[[Category:Genes with homologs in Takifugu rubripes ]]
[[Category:Genes with homologs in Tetraodon nigroviridis ]]
[[Category:Genes with homologs in Xenopus tropicalis ]]
[[Category:Genes with homologs in Shigella flexneri ]]
[[Category:Genes with homologs in E. coli O157]]

Latest revision as of 08:29, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000018612 (score: 1.000; bootstrap: 100%)
  • ENSANGP00000018663 (score: 0.067)
  • ENSANGP00000019052 (score: 0.061)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000022004 (score: 1.000; bootstrap: 100%)
  • ENSAPMP00000004269 (score: 0.097)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT5G26240 (score: 1.000; bootstrap: 71%)
  • AT5G49890 (score: 0.334)
  • AT5G33280 (score: 0.325)
  • AT5G40890 (score: 0.312)
  • AT3G27170 (score: 0.312)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000001973 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000014770 (score: 0.797)
  • ENSBTAP00000039858 (score: 0.772)
  • ENSBTAP00000016291 (score: 0.116)
  • ENSBTAP00000021122 (score: 0.110)
  • ENSBTAP00000027587 (score: 0.099)
  • ENSBTAP00000012099 (score: 0.098)
  • ENSBTAP00000014531 (score: 0.062)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00041732 (score: 1.000; bootstrap: 100%)
  • WBGene00026154 (score: 0.095)
  • WBGene00033929 (score: 0.070)
  • WBGene00026047 (score: 0.062)
  • WBGene00034871 (score: 0.059)
  • WBGene00025876 (score: 0.055)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00000530 (score: 1.000; bootstrap: 100%)
  • WBGene00000531 (score: 0.283)
  • WBGene00000529 (score: 0.236)
  • WBGene00000528 (score: 0.228)
  • WBGene00000532 (score: 0.070)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000024331 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000028947 (score: 0.252)
  • ENSCAFP00000011380 (score: 0.088)
  • ENSCAFP00000023526 (score: 0.085)
  • ENSCAFP00000016986 (score: 0.082)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000014414 (score: 1.000; bootstrap: 100%)
  • ENSCINP00000008574 (score: 0.062)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040426-1379 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-2313 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0217756 (score: 1.000; bootstrap: 100%)
  • DDB0215359 (score: 0.403)
  • DDB0215063 (score: 0.403)
  • DDB0169026 (score: 0.364)
  • DDB0218077 (score: 0.159)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0036566 (score: 1.000; bootstrap: 100%)
  • FBgn0051116 (score: 0.072)
  • FBgn0033755 (score: 0.062)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA18785-PA (score: 1.000; bootstrap: 100%)
  • GA21190-PA (score: 0.087)
  • GA16020-PA (score: 0.069)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000026752 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000031721 (score: 0.791)
  • ENSGALP00000015730 (score: 0.779)
  • ENSGALP00000009650 (score: 0.291)
  • ENSGALP00000007290 (score: 0.091)
  • ENSGALP00000023640 (score: 0.089)
  • ENSGALP00000012212 (score: 0.078)
  • ENSGALP00000024538 (score: 0.055)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000343213 (score: 1.000; bootstrap: 100%)
  • ENSP00000262649 (score: 0.798)
  • ENSP00000353857 (score: 0.788)
  • ENSP00000265593 (score: 0.112)
  • ENSP00000262318 (score: 0.110)
  • ENSP00000234487 (score: 0.106)
  • ENSP00000339867 (score: 0.098)
  • ENSP00000332771 (score: 0.060)
  • ENSP00000349974 (score: 0.059)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000030357 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000017923 (score: 0.585)
  • ENSMMUP00000013392 (score: 0.420)
  • ENSMMUP00000009864 (score: 0.114)
  • ENSMMUP00000010286 (score: 0.109)
  • ENSMMUP00000023981 (score: 0.060)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000004121 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000014144 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000021752 (score: 0.792)
  • ENSMODP00000003669 (score: 0.751)
  • ENSMODP00000003112 (score: 0.356)
  • ENSMODP00000001665 (score: 0.329)
  • ENSMODP00000020222 (score: 0.096)
  • ENSMODP00000013721 (score: 0.088)

From Inparanoid:20070104

Mus musculus

  • MGI:99486 (score: 1.000; bootstrap: 100%)
  • MGI:104571 (score: 0.784)
  • MGI:103555 (score: 0.784)
  • MGI:105061 (score: 0.113)
  • MGI:1347048 (score: 0.112)
  • MGI:1347049 (score: 0.110)
  • MGI:88417 (score: 0.096)
  • MGI:1329026 (score: 0.060)
  • MGI:1930643 (score: 0.053)

From Inparanoid:20070104

Oryza gramene

  • Q6YVX5 (score: 1.000; bootstrap: 54%)
  • Q8LPA1 (score: 0.924)
  • Q8LPA0 (score: 0.883)
  • Q8LPA2 (score: 0.859)
  • Q84QC8 (score: 0.794)
  • Q5N8W8 (score: 0.673)
  • Q7XTM5 (score: 0.555)
  • Q6ZDC2 (score: 0.547)
  • Q851D8 (score: 0.357)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000041062 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000028470 (score: 0.797)
  • ENSPTRP00000037098 (score: 0.185)
  • ENSPTRP00000026999 (score: 0.125)
  • ENSPTRP00000012980 (score: 0.110)
  • ENSPTRP00000000295 (score: 0.093)
  • ENSPTRP00000000391 (score: 0.065)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000003895 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000004778 (score: 0.719)
  • ENSRNOP00000014845 (score: 0.719)
  • ENSRNOP00000048776 (score: 0.103)
  • ENSRNOP00000023615 (score: 0.100)
  • ENSRNOP00000011287 (score: 0.094)
  • ENSRNOP00000013103 (score: 0.052)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC19C71 (score: 1.000; bootstrap: 100%)
  • SPBC8872 (score: 0.080)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000163159 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000169437 (score: 0.178)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00008386001 (score: 1.000; bootstrap: 68%)
  • GSTENP00026719001 (score: 0.650)
  • GSTENP00015349001 (score: 0.395)
  • GSTENP00020608001 (score: 0.117)
  • GSTENP00010593001 (score: 0.086)
  • GSTENP00005643001 (score: 0.065)
  • GSTENP00019420001 (score: 0.061)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000004481 (score: 1.000; bootstrap: 81%)
  • ENSXETP00000034303 (score: 0.544)
  • ENSXETP00000050058 (score: 0.531)

From Inparanoid:20070104

Shigella flexneri

YADQ

From SHIGELLACYC

E. coli O157

YADQ

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00654 Voltage gated chloride channel

Panther (EcoliWiki Page)

PTHR11689:SF14

Superfamily (EcoliWiki Page)

SUPERFAMILY:81340

EcoCyc

EcoCyc:EG12331

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12331

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002206

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2235

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0000533

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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