idnR:Quickview: Difference between revisions

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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[idnR:Gene|''idnR]]'' (synonyms: ''ECK4257, b4264, JW4221, yjgS, gntH, gntS?'')<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
''idnR''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[idnR:Gene_Product(s)|IdnR product]]<ref name='LIB:Riley_2006'/>: DNA-binding transcriptional repressor, 5-gluconate-binding product, B4264 product, GntH product, YjgS product
''ECK4257, b4264, JW4221, yjgS, gntH, gntS?''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>, gntS?''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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IdnR transcriptional regulator<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
IdnR transcriptional regulator<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


idn operon activator; represses GntR-regulated genes gntKU and gntT<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''DNA-binding transcriptional repressor, 5-gluconate-binding<ref name='LIB:Riley_2006'/>, B4264<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, GntH<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YjgS<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, IdnR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK4257, gntH, gntS?, JW4221, yjgS, b4264''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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|-
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:idnR|idnR]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:idnDOTR|idnDOTR]]<ref name='LIB:EcoCyc10.6'/>, idnD  
transcription unit(s): [[:Category:Txn_unit:idnR|idnR]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:idnDOTR|idnDOTR]]<ref name='LIB:EcoCyc10.6'/>, idnD  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=idnR&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7891]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120004386&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=idnR&loc=MG1655%3A4489162..4488164,W3110%3A4495819..4494821,DH10B%3A4590970..4589972,REL606%3A4474366..4473368,BW2952%3A4426899..4427897]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4426899&end=4427897&gene=idnR&aa=mrnhrislqdiatlagvtkmtvsryirspkkvaketgeriakimeeinyipnrapgmllnaqsytlgilipsfqnqlfadilagiesvtsehnyqtlianynydrdseeesvinllsynidgiilsekyhtirtvkflrsatipvvelmdvqgerldmevgfdnrqaafdmvctmlekrvrhkilylgskddtrdeqryqgycdammlhnlsplrmnpraissihlgmqlmrdalsanpdldgvfctnddiamgalllcrernlavpeqisiagfhgleigrqmipslasvitprfdigrmaaqmllskiknndhnhntvdlgyqiyhgntl]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=idnR+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=idnR]]&nbsp;&nbsp;
 
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===Notes===
===Notes===
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==References==
==References==
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Latest revision as of 21:49, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

idnR

Gene Synonym(s)

ECK4257, b4264, JW4221, yjgS, gntH, gntS?[1][2], gntS?

Product Desc.

IdnR transcriptional regulator[2][3]

idn operon activator; represses GntR-regulated genes gntKU and gntT[4]

Product Synonyms(s)

DNA-binding transcriptional repressor, 5-gluconate-binding[1], B4264[2][1], GntH[2][1], YjgS[2][1], IdnR[2][1] , ECK4257, gntH, gntS?, JW4221, yjgS, b4264

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): idnR[2], idnDOTR[2], idnD

Regulation/Activity
Quick Links



        

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Notes

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References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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