ydaM:Quickview: Difference between revisions

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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[ydaM:Gene|''ydaM]]'' (synonyms: ''ECK1338, b1341, JW5206'')<ref name='LIB:Riley_2006'/>
''ydaM''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[ydaM:Gene_Product(s)|YdaM product]]<ref name='LIB:Riley_2006'/>: predicted diguanylate cyclase, GGDEF domain signalling protein product, B1341 product
''ECK1338, b1341, JW5206''<ref name='LIB:Riley_2006'/>, JW5206''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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diguanylate cyclase<ref name='LIB:EcoCyc10.6'/> diguanylate cyclase, transcriptional modulator<ref name='LIB:EcoCyc11.1'/>  
diguanylate cyclase<ref name='LIB:EcoCyc10.6'/>; diguanylate cyclase, transcriptional modulator<ref name='LIB:EcoCyc11.1'/>


Diguanylate cyclase, csgD regulator; also regulates GGDEF protein YaiC<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''predicted diguanylate cyclase, GGDEF domain signalling protein<ref name='LIB:Riley_2006'/>, B1341<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YdaM<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK1338, JW5206, b1341''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:ydaM|ydaM]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:ydaM|ydaM]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=ydaM&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6673]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003268&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=ydaM&loc=MG1655%3A1405819..1404587,W3110%3A1409509..1408277,DH10B%3A1495215..1493983,REL606%3A1404965..1403733,BW2952%3A1296646..1297878]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1296646&end=1297878&gene=ydaM&aa=mtwlfcdriatkidknngismithnfntldlltspvwivspfeeqliyansaakllmqdltfsqlrtgpysvssqkelpkylsdlqnqhdiieiltvqrkeeetalscrlvlrkltetepviifegieapatlglkasrsanyqrkkqgfyarffltnsapmllidpsrdgqivdanlaalnfygynhetmcqkhtweinmlgrrvmpimheishlpgghkplnfvhkladgstrhvqtyagpieiygdklmlcivhditeqkrleeqlehaahhdamtgllnrrqfyhitepgqmqhlaiaqdyslllidtdrfkhindlyghskgdevlcalartlescarkgdlvfrwggeefvlllprtpldtalslaetirvsvakvsisglprftvsigvahhegnesidelfkrvddalyrakndgrnrvlaa]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ydaM+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=ydaM]]&nbsp;&nbsp;
 
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===Notes===
===Notes===
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YdaM has  a central PAS domain, then a C-terminal diguanylate cyclase GGDEF domain. RpoS regulon (Weber, 2006). YdaM expression is thermoregulated and may act as a thermosensor for curli control (Weber, 2006). YdaM/Gmr(YciR) constitute an RpoS-regulated c-di-GMP synthesis/degradation module inversely regulated by Hns and controlling the expression of curli genes (Weber, 2006). YdaM has diguanylate cyclase activity in vitro (Weber, 2006).<ref name='LIB:EcoGene'/>




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==References==
==References==
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Latest revision as of 21:43, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

ydaM

Gene Synonym(s)

ECK1338, b1341, JW5206[1], JW5206

Product Desc.

diguanylate cyclase[2]; diguanylate cyclase, transcriptional modulator[3]

Diguanylate cyclase, csgD regulator; also regulates GGDEF protein YaiC[4]

Product Synonyms(s)

predicted diguanylate cyclase, GGDEF domain signalling protein[1], B1341[2][1], YdaM[2][1] , ECK1338, JW5206, b1341

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ydaM[2]

Regulation/Activity
Quick Links



        

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Notes

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YdaM has a central PAS domain, then a C-terminal diguanylate cyclase GGDEF domain. RpoS regulon (Weber, 2006). YdaM expression is thermoregulated and may act as a thermosensor for curli control (Weber, 2006). YdaM/Gmr(YciR) constitute an RpoS-regulated c-di-GMP synthesis/degradation module inversely regulated by Hns and controlling the expression of curli genes (Weber, 2006). YdaM has diguanylate cyclase activity in vitro (Weber, 2006).[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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