rlmD:Quickview: Difference between revisions

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{{Tab On|Quickview|rumB}}{{Tab|Gene|rumB}}{{Tab|Gene Product(s)|rumB}}{{Tab|Expression|rumB}}{{Tab|Evolution|rumB}}{{Tab|On One Page|rumB}}{{TabsBottom}}
{{Tab On|Quickview|rlmD}}{{Tab|Gene|rlmD}}{{Tab|Gene Product(s)|rlmD}}{{Tab|Expression|rlmD}}{{Tab|Evolution|rlmD}}{{Tab|On One Page|rlmD}}{{TabsBottom}}
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[rumB:Gene|''rumB]]'' (synonyms: ''ECK0850, b0859, JW0843, ybjF'')<ref name='LIB:Riley_2006'/>
''rlmD''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[rumB:Gene_Product(s)|RumB product]]<ref name='LIB:Riley_2006'/>: 23S rRNA m(5)U747 methyltransferase product, B0859 product, YbjF product
''rumB, ECK0850, b0859, JW0843, ybjF''<ref name='LIB:Riley_2006'/>, ybjF''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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23S ribosomal RNA 5-methyluridine methyltransferase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
23S ribosomal RNA 5-methyluridine methyltransferase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


23S rRNA (uracil-5)-methyltransferase, responsible for modification at position U747, SAM-dependent<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''23S rRNA m(5)U747 methyltransferase<ref name='LIB:Riley_2006'/>, B0859<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YbjF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RumB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0850, JW0843, ybjF, b0859''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:ybjO|ybjO]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:ybjO|ybjO]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=rlmD&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11247]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001223&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=rlmD&loc=MG1655%3A897741..898868,W3110%3A898940..900067,DH10B%3A951669..952796,REL606%3A915225..916352,BW2952%3A800709..801836]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=800709&end=801836&gene=rlmD&aa=mqcalydagrcrscqwimqpipeqlsaktadlknlladfpveewcapvsgpeqgfrnkakmvvsgsvekpllgmlhrdgtpedlcdcplypasfapvfaalkpfiaragltpynvarkrgelkyilltesqsdggmmlrfvlrsdtklaqlrkalpwlheqlpqlkvitvniqpvhmaimegeteiylteqqalaerfndvplwirpqsffqtnpavasqlyatardwvrqlpvkhmwdlfcgvggfglhcatpdmqltgieiaseaiacakqsaaelgltrlqfqaldstqfataqgdvpelvlvnpprrgigkplcdylstmaprfiiysscnaqtmakdirelpgfriervqlfdmfphtahyevltllvkq]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=rlmD+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=rlmD]]&nbsp;&nbsp;
 
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===Notes===
===Notes===
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==References==
==References==
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Latest revision as of 21:46, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

rlmD

Gene Synonym(s)

rumB, ECK0850, b0859, JW0843, ybjF[1], ybjF

Product Desc.

23S ribosomal RNA 5-methyluridine methyltransferase[2][3]

23S rRNA (uracil-5)-methyltransferase, responsible for modification at position U747, SAM-dependent[4]

Product Synonyms(s)

23S rRNA m(5)U747 methyltransferase[1], B0859[2][1], YbjF[2][1], RumB[2][1] , ECK0850, JW0843, ybjF, b0859

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ybjO[2]

Regulation/Activity
Quick Links



        

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See Help:Quickview for help with entering information in the Quickview table.

Notes

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References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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