sfmA:Quickview: Difference between revisions

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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[sfmA:Gene|''sfmA]]'' (synonyms: ''ECK0523, b0530, JW0519'')<ref name='LIB:Riley_2006'/>
''sfmA''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[sfmA:Gene_Product(s)|SfmA product]]<ref name='LIB:Riley_2006'/>: predicted fimbrial-like adhesin protein product, B0530 product
''ECK0523, b0530, JW0519''<ref name='LIB:Riley_2006'/>, fimA, JW0519''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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putative fimbrial-like protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
putative fimbrial-like protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


Function unknown, FimA homolog<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''predicted fimbrial-like adhesin protein<ref name='LIB:Riley_2006'/>, B0530<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, SfmA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0523, fimA, JW0519, b0530''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:sfmA|sfmA]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:sfmA|sfmA]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=sfmA&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6290]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120002898&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=sfmA&loc=MG1655%3A557435..557977,W3110%3A557435..557977,DH10B%3A496767..497309,REL606%3A530320..530862,BW2952%3A460195..460737]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=460195&end=460737&gene=sfmA&aa=mesineiegiymklrfissalaaalfaatgsyaavvdggtihfegelvnaacsvntdsadqvvtlgqyrtdifnavgntsalipftiqlndcdpvvaanaavafsgqadaindnllaiasstntttatgvgieildntsailkpdgnsfstnqnlipgtnvlhfsarykgtgtsasagqanadatfimrye]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=sfmA+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=sfmA]]&nbsp;&nbsp;
 
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===Notes===
===Notes===
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Originally identified as a Salmonella fimbriae gene homolog.  One of 25 FimA homologs in EcoGene. First 23 aa are predicted to be a type I signal peptide.<ref name='LIB:EcoGene'/>




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==References==
==References==
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Latest revision as of 21:46, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

sfmA

Gene Synonym(s)

ECK0523, b0530, JW0519[1], fimA, JW0519

Product Desc.

putative fimbrial-like protein[2][3]

Function unknown, FimA homolog[4]

Product Synonyms(s)

predicted fimbrial-like adhesin protein[1], B0530[2][1], SfmA[2][1] , ECK0523, fimA, JW0519, b0530

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): sfmA[2]

Regulation/Activity
Quick Links



        

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


Originally identified as a Salmonella fimbriae gene homolog. One of 25 FimA homologs in EcoGene. First 23 aa are predicted to be a type I signal peptide.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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