Paralogs: Difference between revisions
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Table edited by Siegele via TableEdit |
Table edited by Siegele via TableEdit |
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Manually curated list of paralogous proteins in the E. coli K-12 genome. IN PROGRESS | |||
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!|Gene!!Paralog | !|Gene!!Paralog!!Score!!E value!!Method!!Identities!!Positives!!Gaps | ||
|- | |- | ||
| | | | ||
ubiF | [[ubiF:Quickview|''ubiF'']] | ||
| | | | ||
ubiI | [[visC:Quickview|''ubiI'']] | ||
| | | | ||
208 bits (530) | 208 bits (530) | ||
| Line 19: | Line 22: | ||
2e-63 | 2e-63 | ||
| | | | ||
BLAST ( | BLAST (Compositional | ||
matrix adjust.) | |||
| | | | ||
138/368 (38%) | 138/368 (38%) | ||
| Line 28: | Line 33: | ||
|- | |- | ||
| | | | ||
ubiF | [[ubiF:Quickview|''ubiF'']] | ||
| | | | ||
ubiH | [[ubiH:Quickview|''ubiH'']] | ||
| | | | ||
148 bits (373) | 148 bits (373) | ||
| Line 36: | Line 41: | ||
6e-41 | 6e-41 | ||
| | | | ||
BLAST ( | BLAST (Compositional | ||
matrix adjust.) | |||
| | | | ||
95/284 (33%) | 95/284 (33%) | ||
| Line 45: | Line 52: | ||
|- | |- | ||
| | | | ||
ubiF | [[ubiF:Quickview|''ubiF'']] | ||
| | | | ||
mhpA | [[mhpA:Quickview|''mhpA'']] | ||
| | | | ||
35.0 bits (79) | 35.0 bits (79) | ||
| Line 53: | Line 60: | ||
0.008 | 0.008 | ||
| | | | ||
BLAST ( | BLAST (Compositional | ||
matrix adjust.) | |||
| | | | ||
46/204 (23%) | 46/204 (23%) | ||
Latest revision as of 18:38, 28 April 2017
Manually curated list of paralogous proteins in the E. coli K-12 genome. IN PROGRESS
| Gene | Paralog | Score | E value | Method | Identities | Positives | Gaps |
|---|---|---|---|---|---|---|---|
|
208 bits (530) |
2e-63 |
BLAST (Compositional matrix adjust.) |
138/368 (38%) |
201/368 (55%) |
5/368 (1%) | ||
|
148 bits (373) |
6e-41 |
BLAST (Compositional matrix adjust.) |
95/284 (33%) |
138/284 (49%) |
1/284 (0%) | ||
|
35.0 bits (79) |
0.008 |
BLAST (Compositional matrix adjust.) |
46/204 (23%) |
78/204 (38%) |
26/204 (13%) | ||