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{{Tab On|Quickview|yjgH}}{{Tab|Gene|yjgH}}{{Tab|Gene Product(s)|yjgH}}{{Tab|Expression|yjgH}}{{Tab|Evolution|yjgH}}{{Tab|On One Page|yjgH}}{{TabsBottom}}
{{Tab On|Quickview|yjgH}}{{Tab|Gene|yjgH}}{{Tab|Gene Product(s)|yjgH}}{{Tab|Expression|yjgH}}{{Tab|Evolution|yjgH}}{{Tab|On One Page|yjgH}}{{TabsBottom}}
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[yjgH:Gene|''yjgH]]'' (synonyms: ''ECK4242, b4248, JW4206'')<ref name='LIB:Riley_2006'/>
''yjgH''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[yjgH:Gene_Product(s)|YjgH product]]<ref name='LIB:Riley_2006'/>: predicted mRNA endoribonuclease<ref name='LIB:Riley_2006'/>, B4248<ref name='LIB:EcoCyc10.6'/>, YjgH<ref name='LIB:EcoCyc10.6'/>
''ECK4242, b4248, JW4206''<ref name='LIB:Riley_2006'/>, JW4206''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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hypothetical protein<ref name='LIB:EcoCyc10.6'/>predicted mRNA endoribonuclease<ref name='LIB:EcoCyc11.1'/>
hypothetical protein<ref name='LIB:EcoCyc10.6'/>; predicted mRNA endoribonuclease<ref name='LIB:EcoCyc11.1'/>
 


Function unknown<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''predicted mRNA endoribonuclease<ref name='LIB:Riley_2006'/>, B4248<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YjgH<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK4242, JW4206, b4248''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:txn_units:yjgH|yjgH]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:yjgH|yjgH]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=yjgH&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7879]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120004374&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=yjgH&loc=MG1655%3A4471232..4470837,W3110%3A4477889..4477494,REL606%3A4456486..4456091,DH10B%3A4573040..4572645,BW2952%3A4409572..4409967]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4409572&end=4409967&gene=yjgH&aa=mvertavfpagrhslyaehrysaairsgdllfvsgqvgsredgtpepdfqqqvrlafdnlhatlaaagctfddiidvtsfhtdpenqfedimtvkneifsappypnwtavgvtwlagfdfeikviaripeq]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=yjgH+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=yjgH]]&nbsp;&nbsp;
 
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==Notes==
===Notes===
{{BacktoTop}}
 
YjgF, RutC, TdcF, YoaB and YjgH are paralogs and members of a highly conserved YjgF family (pfam:PF01042) with diverse mutant phenotypes and unknown molecular function; the family members form homotrimers, some binding 2-ketoglutarate or related compounds. The rat homolog PSP (perchloric acid-soluble protein) has been reported to have endoribonuclease activity, Endoribonuclease L, against ss mRNA, inhibiting translation, but this activity has not been demonstrated for other members.<ref name='LIB:EcoGene'/>
 




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==References==
==References==
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<references/>
<references/>
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Latest revision as of 21:40, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

yjgH

Gene Synonym(s)

ECK4242, b4248, JW4206[1], JW4206

Product Desc.

hypothetical protein[2]; predicted mRNA endoribonuclease[3]

Function unknown[4]

Product Synonyms(s)

predicted mRNA endoribonuclease[1], B4248[2][1], YjgH[2][1] , ECK4242, JW4206, b4248

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): yjgH[2]

Regulation/Activity
Quick Links



        

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Notes

[back to top]


YjgF, RutC, TdcF, YoaB and YjgH are paralogs and members of a highly conserved YjgF family (pfam:PF01042) with diverse mutant phenotypes and unknown molecular function; the family members form homotrimers, some binding 2-ketoglutarate or related compounds. The rat homolog PSP (perchloric acid-soluble protein) has been reported to have endoribonuclease activity, Endoribonuclease L, against ss mRNA, inhibiting translation, but this activity has not been demonstrated for other members.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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