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{{Tab On|Quickview|yjeF}}{{Tab|Gene|yjeF}}{{Tab|Gene Product(s)|yjeF}}{{Tab|Expression|yjeF}}{{Tab|Evolution|yjeF}}{{Tab|On One Page|yjeF}}{{TabsBottom}}
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[yjeF:Gene|''yjeF]]'' (synonyms: ''ECK4163, b4167, JW4125'')<ref name='LIB:Riley_2006'/>
''yjeF''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[yjeF:Gene_Product(s)|YjeF product]]<ref name='LIB:Riley_2006'/>: predicted carbohydrate kinase<ref name='LIB:Riley_2006'/>, B4167<ref name='LIB:EcoCyc10.6'/>, YjeF<ref name='LIB:EcoCyc10.6'/>
''ECK4163, b4167, JW4125''<ref name='LIB:Riley_2006'/>, JW4125''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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predicted carbohydrate kinase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
predicted carbohydrate kinase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


 
Putative kinase, ribokinase-like superfamily<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''predicted carbohydrate kinase<ref name='LIB:Riley_2006'/>, B4167<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YjeF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK4163, JW4125, b4167''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:txn_units:yjeFE-amiB-mutL-miaA-hfq-hflXKC|yjeFE-amiB-mutL-miaA-hfq-hflXKC]]<ref name='LIB:EcoCyc10.6'/>, ORF55-ORF17-amiB-mutL-miaA-hfq-hflXKC  
transcription unit(s): [[:Category:Txn_unit:yjeFE-amiB-mutL-miaA-hfq-hflXKC|yjeFE-amiB-mutL-miaA-hfq-hflXKC]]<ref name='LIB:EcoCyc10.6'/>, ORF55-ORF17-amiB-mutL-miaA-hfq-hflXKC  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=yjeF&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11758]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001694&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=yjeF&loc=MG1655%3A4392089..4393636,W3110%3A4398746..4400293,REL606%3A4372221..4373768,DH10B%3A4492451..4493998,BW2952%3A4330824..4332371]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4330824&end=4332371&gene=yjeF&aa=mtdhtmkknpvsiphtvwyaddirrgereaadvlgltlyelmlrageaafqvcrsaypdarhwlvlcghgnnggdgyvvarlakavgievtllaqesdkplpeeaalareawlnaggeihasnivwpesvdlivdallgtglrqapresisqlidhanshpapivavdipsgllaetgatpgavinadhtitfialkpglltgkardvtgqlhfdslgldswlagqetkiqrfsaeqlshwlkprrptshkgdhgrlviiggdhgtagairmtgeaalragaglvrvltrseniaplltarpelmvheltmdslteslewadvvvigpglgqqewgkkalqkvenfrkpmlwdadalnllainpdkrhnrvitphpgeaarllgcsvaeiesdrlhcakrlvqryggvavlkgagtvvaahpdalgiidagnagmasggmgdvlsgiigallgqklspydaacagcvahgaaadvlaarfgtrgmlatdlfstlqrivnpevtdknhdessnsap]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=yjeF+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=yjeF]]&nbsp;&nbsp;
 
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==Notes==
===Notes===
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Insertions in yjeF indicate this gene is likely to be non-essential.  YjeF is homologous to B. subtilis YxkO which belongs to the UPF0031 family.  AFMB Structural Genomics target No. 61 (http://afmb.cnrs-mrs.fr/article171.html).  otherPDB (B. subtilis): 1KYH.<ref name='LIB:EcoGene'/>
 




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==References==
==References==
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Latest revision as of 21:40, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

yjeF

Gene Synonym(s)

ECK4163, b4167, JW4125[1], JW4125

Product Desc.

predicted carbohydrate kinase[2][3]

Putative kinase, ribokinase-like superfamily[4]

Product Synonyms(s)

predicted carbohydrate kinase[1], B4167[2][1], YjeF[2][1] , ECK4163, JW4125, b4167

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): yjeFE-amiB-mutL-miaA-hfq-hflXKC[2], ORF55-ORF17-amiB-mutL-miaA-hfq-hflXKC

Regulation/Activity
Quick Links



        

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Notes

[back to top]


Insertions in yjeF indicate this gene is likely to be non-essential. YjeF is homologous to B. subtilis YxkO which belongs to the UPF0031 family. AFMB Structural Genomics target No. 61 (http://afmb.cnrs-mrs.fr/article171.html). otherPDB (B. subtilis): 1KYH.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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