gfcE:Quickview: Difference between revisions

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*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''yccZ, ECK0974, b0983, JW0966''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/><ref name='LIB:EcoCyc10.6'/>
''yccZ, ECK0974, b0983, JW0966''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/><ref name='LIB:EcoCyc10.6'/>, JW0966''
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!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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predicted exopolysaccharide export protein<ref name='LIB:Riley_2006'/>, B0983<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YccZ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, GfcE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''predicted exopolysaccharide export protein<ref name='LIB:Riley_2006'/>, B0983<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YccZ<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, GfcE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0974, JW0966, yccZ, b0983''
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!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
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!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
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[http://porteco.org/AjaxSearch.jsp?searchString=gfcE&s=search PortEco search(gfcE)]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_dna.php?gene=gfcE&loc=MG1655:1045026..1043887,W3110:1046225..1045086,DH10B:1098954..1097815,REL606:1061755..1062894,BW2952:946855..947994 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=946855&end=947994&gene=gfcE&aa= Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=gfcE+AND+escherichia+coli Pubmed(gfcE)]&nbsp;&nbsp;&nbsp; [http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=gfcE Textpresso(gfcE)]
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=gfcE&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6504]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003104&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=gfcE&loc=MG1655%3A1045026..1043887,W3110%3A1046225..1045086,DH10B%3A1098954..1097815,REL606%3A1061755..1062894,BW2952%3A946855..947994]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=946855&end=947994&gene=gfcE&aa=mkknifkfsvltlavlsltactlvpgqnlstsnkdvielpdnqydldkmvniypvtpglidqlrakpimsqanpeleqqianyeyrigigdvlmvtvwdhpelttpagqyrsasdtgnwvnadgaifypyigrlkvagktltqvrneitarldsviespqvdvsvaafrsqkayvtgevsksgqqpitnipltimdainaaggltadadwrnvvltqngvktkvnlyalmqrgdlrqnkllhpgdilfiprnddlkvfvmgevgkqstlkmdrsgmtlaealgnaegmnqdvadatgifviratqnkqngkianiyqlnakdasamilgtefqlepydivyvttaplarwnrvisllvptisgvhdltetsrwiqtwpn]]&nbsp;&nbsp; [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=gfcE+AND+escherichia+coli]]&nbsp;&nbsp; [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=gfcE]]&nbsp;&nbsp;


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Latest revision as of 21:50, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

gfcE

Gene Synonym(s)

yccZ, ECK0974, b0983, JW0966[1][2][3], JW0966

Product Desc.

predicted exopolysaccharide export protein[3][2]

Lipoprotein required for formation of the O-antigen capsule; silenced by IS1D insertion in promoter region[4]

Product Synonyms(s)

predicted exopolysaccharide export protein[1], B0983[3][1], YccZ[3][1], GfcE[3][1] , ECK0974, JW0966, yccZ, b0983

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): yccC[3]

Regulation/Activity
Quick Links



        

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

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GfcE may form a channel through the outer membrane for transport of the O-antigen capsule polysaccharides. yccZ and wza are paralogs. Part of the gfcABCDE-etp-etk operon. First 20 aa are a type II signal peptide. Very weak RBS sequence.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 3.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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