tdcF:Quickview: Difference between revisions

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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK3102, b3113, JW5521, yhaR''<ref name='LIB:Riley_2006'/>
''ECK3102, b3113, JW5521, yhaR''<ref name='LIB:Riley_2006'/>, yhaR''
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!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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predicted L-PSP (mRNA) endoribonuclease<ref name='LIB:Riley_2006'/>, B3113<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YhaR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, TdcF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''predicted L-PSP (mRNA) endoribonuclease<ref name='LIB:Riley_2006'/>, B3113<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YhaR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, TdcF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK3102, JW5521, yhaR, b3113''
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!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
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!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
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[http://porteco.org/AjaxSearch.jsp?searchString=tdcF&s=search PortEco search(tdcF)]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_dna.php?gene=tdcF&loc=MG1655:3258132..3257743,W3110:3258766..3258377,DH10B:3355877..3355488,REL606:3193144..3192755,BW2952:3144891..3145280 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3144891&end=3145280&gene=tdcF&aa=mnsnrmlfhvplprrsdaggcmkkiietqrapgaigpyvqgvdlgsmvftsgqipvcpqtgeipadvqdqarlslenvkaivvaaglsvgdiikmtvfitdlndfatinevykqffdehqatyptrscvqvarlpkdvkleieaiavrsa Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=tdcF+AND+escherichia+coli Pubmed(tdcF)]&nbsp;&nbsp;&nbsp; [http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=tdcF Textpresso(tdcF)]
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=tdcF&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7626]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120004177&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=tdcF&loc=MG1655%3A3258132..3257743,W3110%3A3258766..3258377,DH10B%3A3355877..3355488,REL606%3A3193144..3192755,BW2952%3A3144891..3145280]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3144891&end=3145280&gene=tdcF&aa=mnsnrmlfhvplprrsdaggcmkkiietqrapgaigpyvqgvdlgsmvftsgqipvcpqtgeipadvqdqarlslenvkaivvaaglsvgdiikmtvfitdlndfatinevykqffdehqatyptrscvqvarlpkdvkleieaiavrsa]]&nbsp;&nbsp; [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=tdcF+AND+escherichia+coli]]&nbsp;&nbsp; [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=tdcF]]&nbsp;&nbsp;


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Latest revision as of 21:45, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

tdcF

Gene Synonym(s)

ECK3102, b3113, JW5521, yhaR[1], yhaR

Product Desc.

predicted L-PSP (mRNA) endoribonuclease[2][3]

Binds 2-ketoglutarate, function unknown[4]

Product Synonyms(s)

predicted L-PSP (mRNA) endoribonuclease[1], B3113[2][1], YhaR[2][1], TdcF[2][1] , ECK3102, JW5521, yhaR, b3113

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): tdcABCDEFG[2], OP00167, tdcABC

Regulation/Activity
Quick Links



        

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See Help:Quickview for help with entering information in the Quickview table.

Notes

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YjgF, RutC, TdcF, YoaB and YjgH are paralogs and members of a highly conserved YjgF family (pfam:PF01042) with diverse mutant phenotypes and unknown molecular function; the family members form homotrimers, some binding 2-ketoglutarate or related compounds. The rat homolog PSP (perchloric acid-soluble protein) has been reported to have endoribonuclease activity, Endoribonuclease L, against ss mRNA, inhibiting translation, but this activity has not been demonstrated for other members.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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