rsmF:Quickview: Difference between revisions
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* ** PLEASE DON'T EDIT THIS TABLE DIRECTLY. Use the edit table link under the table. ** | * ** PLEASE DON'T EDIT THIS TABLE DIRECTLY. Use the edit table link under the table. ** | ||
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!align=left {{table_heading_style}} |Gene Synonym(s) | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''yebU, ECK1834, b1835, JW5301''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/> | ''yebU, ECK1834, b1835, JW5301''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>, JW5301'' | ||
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!align=left {{table_heading_style}} |Product Desc. | !align=left {{table_heading_style}} |Product Desc. | ||
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!align=left {{table_heading_style}} |Product Synonyms(s) | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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predicted methyltransferase<ref name='LIB:Riley_2006'/>, B1835<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YebU<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RsmF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ''predicted methyltransferase<ref name='LIB:Riley_2006'/>, B1835<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YebU<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RsmF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK1834, JW5301, yebU, b1835'' | ||
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!align=left {{table_heading_style}} |Function from GO | !align=left {{table_heading_style}} |Function from GO | ||
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!align=left {{table_heading_style}} |Quick Links | !align=left {{table_heading_style}} |Quick Links | ||
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[http://porteco.org/AjaxSearch.jsp?searchString=rsmF&s=search | [[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=rsmF&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7008]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003595&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=rsmF&loc=MG1655%3A1918247..1919686,W3110%3A1921937..1923376,REL606%3A1898800..1900239,BW2952%3A1810306..1811745]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1810306&end=1811745&gene=rsmF&aa=mlvaqhtvyfpdafltqmreampstlsfddflaacqrplrrsirvntlkisvadflqltapygwtltpipwceegfwierdnedalplgstaehlsglfyiqeassmlpvaalfadgnapqrvmdvaaapgskttqisarmnnegailanefsasrvkvlhanisrcgisnvalthfdgrvfgaavpemfdailldapcsgegvvrkdpdalknwspesnqeiaatqrelidsafhalrpggtlvystctlnqeeneavclwlketypdaveflplgdlfpgankalteegflhvfpqiydcegffvarlrktqaipalpapkykvgnfpfspvkdreagqirqaatgvglnwdenlrlwqrdkelwlfpvgiealigkvrfsrlgiklaethnkgyrwqheavialaspdnmnafeltpqeaeewyrgrdvypqaapvaddvlvtfqhqpiglakrigsrlknsyprelvrdgklftgna]] [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=rsmF+AND+escherichia+coli]] [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=rsmF]] | ||
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Latest revision as of 21:46, 27 May 2013
{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>
| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
| Standard Name |
rsmF |
|---|---|
| Gene Synonym(s) | |
| Product Desc. |
16S rRNA m5C1407 specific methyltransferase[3][2][4]. Inactivation of the yebU gene leads to loss of methylation at C1407 in 16 S rRNA, but does not interfere with methylation at C1962 in 23 S rRNA. Purified recombinant YebU protein retains its specificity for C1407 in vitro, and methylates 30 S subunits (but not naked 16 S rRNA or 70 S ribosomes) isolated from yebU knockout strains.[3]. Andersen and Douthwaite suggest that a more appropriate designation for yebU would be the rRNA small subunit methyltransferase gene rsmF. 16S rRNA m(5)C1407 methyltransferase, SAM-dependent[5] |
| Product Synonyms(s) |
predicted methyltransferase[1], B1835[2][1], YebU[2][1], RsmF[2][1] , ECK1834, JW5301, yebU, b1835 |
| Function from GO |
<GO_nr /> |
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links |
|
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
References
- ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 3.0 3.1 Andersen, NM & Douthwaite, S (2006) YebU is a m5C methyltransferase specific for 16 S rRNA nucleotide 1407. J. Mol. Biol. 359 777-86 PubMed
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.