dapD:Quickview: Difference between revisions

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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK0164, b0166, JW0161, ssa''<ref name='LIB:Riley_2006'/>
''ECK0164, b0166, JW0161, ssa''<ref name='LIB:Riley_2006'/>, ssa''
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!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase<ref name='LIB:Riley_2006'/>, B0166<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Ssa<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DapD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase<ref name='LIB:Riley_2006'/>, B0166<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Ssa<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DapD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0164, JW0161, ssa, b0166''
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!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
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!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
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[http://porteco.org/AjaxSearch.jsp?searchString=dapD&s=search PortEco search(dapD)]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_dna.php?gene=dapD&loc=MG1655:185947..185123,W3110:185947..185123,DH10B:160051..159227,REL606:188789..187965,BW2952:185122..185946 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=185122&end=185946&gene=dapD&aa=mqqlqniietaferraeitpanadtvtreavnqvialldsgalrvaekidgqwvthqwlkkavllsfrindnqviegaesryfdkvpmkfadydearfqkegfrvvppaavrqgafiarntvlmpsyvnigayvdegtmvdtwatvgscaqigknvhlsggvgiggvleplqanptiiedncfigarsevvegviveegsvismgvyigqstriydretgeihygrvpagsvvvsgnlpskdgkyslycavivkkvdaktrgkvginellrtid Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=dapD+AND+escherichia+coli Pubmed(dapD)]&nbsp;&nbsp;&nbsp; [http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=dapD Textpresso(dapD)]
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=dapD&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10207]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120000201&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=dapD&loc=MG1655%3A185947..185123,W3110%3A185947..185123,DH10B%3A160051..159227,REL606%3A188789..187965,BW2952%3A185122..185946]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=185122&end=185946&gene=dapD&aa=mqqlqniietaferraeitpanadtvtreavnqvialldsgalrvaekidgqwvthqwlkkavllsfrindnqviegaesryfdkvpmkfadydearfqkegfrvvppaavrqgafiarntvlmpsyvnigayvdegtmvdtwatvgscaqigknvhlsggvgiggvleplqanptiiedncfigarsevvegviveegsvismgvyigqstriydretgeihygrvpagsvvvsgnlpskdgkyslycavivkkvdaktrgkvginellrtid]]&nbsp;&nbsp; [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=dapD+AND+escherichia+coli]]&nbsp;&nbsp; [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=dapD]]&nbsp;&nbsp;


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Latest revision as of 21:51, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

dapD

Gene Synonym(s)

ECK0164, b0166, JW0161, ssa[1], ssa

Product Desc.

tetrahydrodipicolinate succinylase subunit[2][3];

Component of tetrahydrodipicolinate succinylase[3]

2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase; mutations suppress growth defects of strains lacking superoxide dismutase[4]

Product Synonyms(s)

2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase[1], B0166[2][1], Ssa[2][1], DapD[2][1] , ECK0164, JW0161, ssa, b0166

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): dapD[2]

Regulation/Activity
Quick Links



        

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

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A dapD mutant is not in the Keio collection; DAP auxotrophs require added DAP to grow and since no DAP was added during mutant construction, no auxotrophic mutants were recovered; dapD is not an essential gene (Baba, 2006). DapD contains hexapeptide repeats. Binds TrxA (Kumar, 2004). HT_Cmplx35_Cyt: DapD+SpeB.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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