waaU:Quickview: Difference between revisions

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{{Tab On|Quickview|waaU}}{{Tab|Gene|waaU}}{{Tab|Gene Product(s)|waaU}}{{Tab|Expression|waaU}}{{Tab|Evolution|waaU}}{{Tab|On One Page|waaU}}{{TabsBottom}}
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[waaU:Gene|''waaU]]'' (synonyms: ''rfaK, ECK3613, b3623, JW3598, waaK'')<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/>
''waaU''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[waaU:Gene_Product(s)|RfaK product]]<ref name='LIB:Riley_2006'/>: lipopolysaccharide core biosynthesis<ref name='LIB:Riley_2006'/>, B3623<ref name='LIB:EcoCyc10.6'/>, WaaU<ref name='LIB:EcoCyc10.6'/>, WaaK<ref name='LIB:EcoCyc10.6'/>, RfaK<ref name='LIB:EcoCyc10.6'/>
''rfaK, ECK3613, b3623, JW3598, waaK''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/>, waaK''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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lipopolysaccharide core biosynthesis; probably hexose transferase<ref name='LIB:EcoCyc10.6'/>lipopolysaccharide core biosynthesis; heptosyl transferse IV; probably hexose transferase<ref name='LIB:EcoCyc11.1'/>
lipopolysaccharide core biosynthesis; probably hexose transferase<ref name='LIB:EcoCyc10.6'/>; lipopolysaccharide core biosynthesis; heptosyl transferse IV; probably hexose transferase<ref name='LIB:EcoCyc11.1'/>
 


Adds terminal GlcNac side branch to the lipopolysaccharide core prior to attachment of the O antigen; not the same as Salmonella rfaK<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''lipopolysaccharide core biosynthesis<ref name='LIB:Riley_2006'/>, B3623<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, WaaU<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, WaaK<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RfaK<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK3613, JW3598, rfaK, waaK, b3623''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:txn_units:rfaQGPSBIJYZK|rfaQGPSBIJYZK]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:rfaQGPSBIJYZK|rfaQGPSBIJYZK]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=waaU&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11423]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001387&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=waaU&loc=MG1655%3A3797335..3796262,W3110%3A3841103..3842176,BW2952%3A3684588..3685661]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3684588&end=3685661&gene=waaU&aa=mrlgtfhkkkrfyinkikinflsflfrnkinnqitdpaqvkscliihdnnklgdlivlssiyrelyskgvkitlltnrkggeflsnnknifefcikestgflemltlckhlrdlqfdivldpfetmpsfkhslilsslkdsyilgfdhwykryysfyhphdeclkehmstraieilkhiygegkfstnydlhlpvdvedkikefigdtriviinplgakkicrltfeqikviyqevkthfenyriiftglpqdlltipileietlpfdefiytvaltkysdfvisvdtalvhiaaayhkptlafypnsrtpeypshliwspnhhksiqivsptytvkdidtetltnsvkrlscidkk]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=waaU+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=waaU]]&nbsp;&nbsp;
 
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==Notes==
===Notes===
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==References==
==References==
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Latest revision as of 21:56, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

waaU

Gene Synonym(s)

rfaK, ECK3613, b3623, JW3598, waaK[1][2], waaK

Product Desc.

lipopolysaccharide core biosynthesis; probably hexose transferase[3]; lipopolysaccharide core biosynthesis; heptosyl transferse IV; probably hexose transferase[2]

Adds terminal GlcNac side branch to the lipopolysaccharide core prior to attachment of the O antigen; not the same as Salmonella rfaK[4]

Product Synonyms(s)

lipopolysaccharide core biosynthesis[1], B3623[3][1], WaaU[3][1], WaaK[3][1], RfaK[3][1] , ECK3613, JW3598, rfaK, waaK, b3623

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): rfaQGPSBIJYZK[3]

Regulation/Activity
Quick Links



        

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Notes

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References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 3.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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