rfaD:Quickview: Difference between revisions

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{{Tab On|Quickview|rfaD}}{{Tab|Gene|rfaD}}{{Tab|Gene Product(s)|rfaD}}{{Tab|Expression|rfaD}}{{Tab|Evolution|rfaD}}{{Tab|On One Page|rfaD}}{{TabsBottom}}
{{Tab On|Quickview|rfaD}}{{Tab|Gene|rfaD}}{{Tab|Gene Product(s)|rfaD}}{{Tab|Expression|rfaD}}{{Tab|Evolution|rfaD}}{{Tab|On One Page|rfaD}}{{TabsBottom}}
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[rfaD:Gene|''rfaD]]'' (synonyms: ''ECK3609, b3619, JW3594, htrM, nbsB, waaD, hldD'')<ref name='LIB:Riley_2006'/>
''rfaD''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[rfaD:Gene_Product(s)|RfaD product]]<ref name='LIB:Riley_2006'/>: ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding<ref name='LIB:Riley_2006'/>, B3619<ref name='LIB:EcoCyc10.6'/>, HldD<ref name='LIB:EcoCyc10.6'/>, WaaD<ref name='LIB:EcoCyc10.6'/>, NbsB<ref name='LIB:EcoCyc10.6'/>, HtrM<ref name='LIB:EcoCyc10.6'/>, RfaD<ref name='LIB:EcoCyc10.6'/>, [[:Category:Complex:ADP-L-glycero-D-mannoheptose-6-epimerase|ADP-L-glycero-D-mannoheptose-6-epimerase]]<ref name='LIB:EcoCyc11.1'/>
''ECK3609, b3619, JW3594, htrM, nbsB, waaD, hldD''<ref name='LIB:Riley_2006'/>, gmhD, hldD''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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ADP-L-glycero-D-mannoheptose-6-epimerase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
ADP-L-glycero-D-mannoheptose-6-epimerase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;


Component of [[:Category:Complex:ADP-L-glycero-D-mannoheptose-6-epimerase|ADP-L-glycero-D-mannoheptose-6-epimerase]]<ref name='LIB:EcoCyc11.1'/>


ADP-L-glycero-D-manno-heptose-6-epimerase; heat-inducible, LPS; allows high-temperature growth<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding<ref name='LIB:Riley_2006'/>, B3619<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HldD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, WaaD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, NbsB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HtrM<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RfaD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK3609, gmhD, hldD, htrM, JW3594, waaD, b3619''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:txn_units:rfaDFCL|rfaDFCL]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:rfaDFCL|rfaDFCL]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=rfaD&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10838]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120000829&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=rfaD&loc=MG1655%3A3792010..3792942,W3110%3A3846428..3845496,DH10B%3A3889587..3890519,REL606%3A3733531..3734463,BW2952%3A3680336..3681268]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3680336&end=3681268&gene=rfaD&aa=miivtggagfigsnivkalndkgitdilvvdnlkdgtkfvnlvdlniadymdkedfliqimageefgdveaifhegacssttewdgkymmdnnyqyskellhyclereipflyassaatyggrtsdfiesreyekplnvygyskflfdeyvrqilpeansqivgfryfnvygpreghkgsmasvafhlntqlnngespklfegsenfkrdfvyvgdvadvnlwflengvsgifnlgtgraesfqavadatlayhkkgqieyipfpdklkgryqaftqadltnlraagydkpfktvaegvteymawlnrda]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=rfaD+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=rfaD]]&nbsp;&nbsp;
 
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==Notes==
===Notes===
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==References==
==References==
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Latest revision as of 21:43, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

rfaD

Gene Synonym(s)

ECK3609, b3619, JW3594, htrM, nbsB, waaD, hldD[1], gmhD, hldD

Product Desc.

ADP-L-glycero-D-mannoheptose-6-epimerase[2][3];

Component of ADP-L-glycero-D-mannoheptose-6-epimerase[3]

ADP-L-glycero-D-manno-heptose-6-epimerase; heat-inducible, LPS; allows high-temperature growth[4]

Product Synonyms(s)

ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding[1], B3619[2][1], HldD[2][1], WaaD[2][1], NbsB[2][1], HtrM[2][1], RfaD[2][1] , ECK3609, gmhD, hldD, htrM, JW3594, waaD, b3619

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): rfaDFCL[2]

Regulation/Activity
Quick Links



        

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Notes

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References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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