msrC:Quickview: Difference between revisions

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Latest revision as of 21:42, 27 May 2013

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Quickview

Standard Name	msrC
Gene Synonym(s)	ECK1831, b1832, JW1821^[1], yebR, JW1821
Product Desc.	conserved protein^[2]^[3] Free methionine-(R)-sulfoxide reductase^[4]
Product Synonyms(s)	conserved protein^[1], B1832^[2]^[1], YebR^[2]^[1] , MsrC, ECK1831, JW1821, b1832
Function from GO	<GO_nr />
Knock-Out Phenotype
Regulation/Expression	transcription unit(s): yebR^[2]
Regulation/Activity
Quick Links
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Notes

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Multiple alignment and RBS predictions support the annotation of native YebR as a 165 aa protein. A fully functional enzyme was translated efficiently initiating at this start site using a clone that also expressed a longer version with an N-terminal His-tag extension (Lin, 2007). Contains GAF domain. UPF0067 and COG1956 first functional member.^[4]

References

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↑ ^1.0 ^1.1 ^1.2 ^1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.0 ^4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.

[LIB:Riley_2006-1] 1.0 ^1.1 ^1.2 ^1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)

[LIB:EcoCyc10.6-2] 2.0 ^2.1 ^2.2 ^2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

[LIB:EcoCyc11.1-3] EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

[LIB:EcoGene-4] 4.0 ^4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.

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@@ Line 10: / Line 10: @@
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 <noinclude>{{TabsTop}}
-{{Tab On|Quickview|yebR}}{{Tab|Gene|yebR}}{{Tab|Gene Product(s)|yebR}}{{Tab|Expression|yebR}}{{Tab|Evolution|yebR}}{{Tab|On One Page|yebR}}{{TabsBottom}}
+{{Tab On|Quickview|msrC}}{{Tab|Gene|msrC}}{{Tab|Gene Product(s)|msrC}}{{Tab|Expression|msrC}}{{Tab|Evolution|msrC}}{{Tab|On One Page|msrC}}{{TabsBottom}}
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 *   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 *
-****************************************************************************************** -->{{Quickview_table_help}}
+****************************************************************************************** -->
 {|   id="B49b02dd9562c9"  class=" tableEdit New_Quickview_Table"
@@ Line 29: / Line 29: @@
 !align=left {{table_heading_style}} |Standard Name
 ||
-''yebR''
+''msrC''
 |-
 !align=left {{table_heading_style}} |Gene Synonym(s)
 ||
-''ECK1831, b1832, JW1821''<ref name='LIB:Riley_2006'/>
+''ECK1831, b1832, JW1821''<ref name='LIB:Riley_2006'/>, yebR, JW1821''
 |-
 !align=left {{table_heading_style}} |Product Desc.
@@ Line 43: / Line 43: @@
 !align=left {{table_heading_style}} |Product Synonyms(s)
 ||
-conserved protein<ref name='LIB:Riley_2006'/>, B1832<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YebR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
+''conserved protein<ref name='LIB:Riley_2006'/>, B1832<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YebR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , MsrC, ECK1831, JW1821, b1832''
 |-
 !align=left {{table_heading_style}} |Function from GO
@@ Line 63: / Line 63: @@
 !align=left {{table_heading_style}} |Quick Links
 ||
-[http://porteco.org/AjaxSearch.jsp?searchString=yebR&s=search PortEco search(yebR)]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_dna.php?gene=yebR&loc=MG1655:1914206..1913655,W3110:1917896..1917345,DH10B:2004777..2004226,REL606:1894759..1894208,BW2952:1805714..1806211 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1805714&end=1806211&gene=yebR&aa=mliligwqiqvrqpsdyimnktefyadlnrdfnalmagetsflatlantsallyerltdinwagfylleddtlvlgpfqgkiacvripvgrgvcgtavarnqvqriedvhvfdghiacdaasnseivlplvvknqiigvldidstvfgrftdedeqglrqlvaqlekvlattdykkffasvag Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=yebR+AND+escherichia+coli Pubmed(yebR)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/search?q=yebR Textpresso(yebR)]
+[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=msrC&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7005]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003592&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=msrC&loc=MG1655%3A1914206..1913655,W3110%3A1917896..1917345,DH10B%3A2004777..2004226,REL606%3A1894759..1894208,BW2952%3A1805714..1806211]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1805714&end=1806211&gene=msrC&aa=mliligwqiqvrqpsdyimnktefyadlnrdfnalmagetsflatlantsallyerltdinwagfylleddtlvlgpfqgkiacvripvgrgvcgtavarnqvqriedvhvfdghiacdaasnseivlplvvknqiigvldidstvfgrftdedeqglrqlvaqlekvlattdykkffasvag]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=msrC+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=msrC]]&nbsp;&nbsp;
 |- class="tableEdit_footer"

msrC:Quickview: Difference between revisions

Latest revision as of 21:42, 27 May 2013

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