cdgR:Quickview: Difference between revisions

← Older edit

Latest revision as of 21:42, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview

Standard Name	cdgR
Gene Synonym(s)	ECK1705, b1707, JW1697^[1], ydiV, JW1697
Product Desc.	conserved protein^[2]^[3] Putative cyclic-di-GMP phosphodiesterase, function unknown; mutation decreases cAMP levels in an sdiA mutant; pheromone AI-1-responsive gene^[4]
Product Synonyms(s)	conserved protein^[1], B1707^[2]^[1], YdiV^[2]^[1] , CdgR, ECK1705, JW1697, b1707
Function from GO	<GO_nr />
Knock-Out Phenotype
Regulation/Expression	transcription unit(s): ydiV^[2]
Regulation/Activity
Quick Links
edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]

YdiV contains a cyclic-di-GMP phosphodiesterase EAL domain. Extracellular AI-1 stimulates ydiV expression in an SdiA-dependent manner (Zhou, 2008). An sdiA ydiV double mutant has twofold reduced cAMP levels than inhibits quorum sensing system 2 (Zhou, 2008).^[4]

References

[back to top]

↑ ^1.0 ^1.1 ^1.2 ^1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.0 ^4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.

[LIB:Riley_2006-1] 1.0 ^1.1 ^1.2 ^1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)

[LIB:EcoCyc10.6-2] 2.0 ^2.1 ^2.2 ^2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

[LIB:EcoCyc11.1-3] EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

[LIB:EcoGene-4] 4.0 ^4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.

[1]

[2]

[3]

[4]

@@ Line 10: / Line 10: @@
 -->{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
 <noinclude>{{TabsTop}}
-{{Tab On|Quickview|ydiV}}{{Tab|Gene|ydiV}}{{Tab|Gene Product(s)|ydiV}}{{Tab|Expression|ydiV}}{{Tab|Evolution|ydiV}}{{Tab|On One Page|ydiV}}{{TabsBottom}}
+{{Tab On|Quickview|cdgR}}{{Tab|Gene|cdgR}}{{Tab|Gene Product(s)|cdgR}}{{Tab|Expression|cdgR}}{{Tab|Evolution|cdgR}}{{Tab|On One Page|cdgR}}{{TabsBottom}}
 {|
 |- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"
@@ Line 23: / Line 23: @@
 *   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 *
-****************************************************************************************** -->{{Quickview_table_help}}
+****************************************************************************************** -->
 {|   id="J49b02d6be1648"  class=" tableEdit New_Quickview_Table"
@@ Line 29: / Line 29: @@
 !align=left {{table_heading_style}} |Standard Name
 ||
-''ydiV''
+''cdgR''
 |-
 !align=left {{table_heading_style}} |Gene Synonym(s)
 ||
-''ECK1705, b1707, JW1697''<ref name='LIB:Riley_2006'/>
+''ECK1705, b1707, JW1697''<ref name='LIB:Riley_2006'/>, ydiV, JW1697''
 |-
 !align=left {{table_heading_style}} |Product Desc.
@@ Line 43: / Line 43: @@
 !align=left {{table_heading_style}} |Product Synonyms(s)
 ||
-conserved protein<ref name='LIB:Riley_2006'/>, B1707<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YdiV<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
+''conserved protein<ref name='LIB:Riley_2006'/>, B1707<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YdiV<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , CdgR, ECK1705, JW1697, b1707''
 |-
 !align=left {{table_heading_style}} |Function from GO
@@ Line 63: / Line 63: @@
 !align=left {{table_heading_style}} |Quick Links
 ||
-[http://porteco.org/AjaxSearch.jsp?searchString=ydiV&s=search PortEco search(ydiV)]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_dna.php?gene=ydiV&loc=MG1655:1790044..1789331,W3110:1793734..1793021,DH10B:1880615..1879902,REL606:1769117..1768575,BW2952:1681390..1682103 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1681390&end=1682103&gene=ydiV&aa=mkiflenlyhsdcyflpirdnqqvlvgvelithfssedgtvriptsrviaqlteeqhwqlfseqlellkscqhffiqhklfawlnltpqvatlllerdnyagellkypfiellinenyphlnegkdnrgllslsqvyplvlgnlgagnstmkavfdglftrvmldksfiqqqithrsfepfiraiqaqispccnciiaggidtaeilaqitpfdfhalqgclwpavpinqittlvqr Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ydiV+AND+escherichia+coli Pubmed(ydiV)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/search?q=ydiV Textpresso(ydiV)]
+[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=cdgR&s=search]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=cdgR&loc=MG1655%3A1790044..1789331,W3110%3A1793734..1793021,DH10B%3A1880615..1879902,REL606%3A1769117..1768575,BW2952%3A1681390..1682103]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1681390&end=1682103&gene=cdgR&aa=mkiflenlyhsdcyflpirdnqqvlvgvelithfssedgtvriptsrviaqlteeqhwqlfseqlellkscqhffiqhklfawlnltpqvatlllerdnyagellkypfiellinenyphlnegkdnrgllslsqvyplvlgnlgagnstmkavfdglftrvmldksfiqqqithrsfepfiraiqaqispccnciiaggidtaeilaqitpfdfhalqgclwpavpinqittlvqr]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=cdgR+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=cdgR]]&nbsp;&nbsp;
 |- class="tableEdit_footer"

cdgR:Quickview: Difference between revisions

Latest revision as of 21:42, 27 May 2013

Notes

References

Navigation menu

Search