nrdR:Quickview: Difference between revisions

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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ybaD, ECK0407, b0413, JW0403''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/>
''ybaD, ECK0407, b0413, JW0403''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/>, JW0403, ribX''
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!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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conserved protein<ref name='LIB:Riley_2006'/>, B0413<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YbaD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, NrdR<ref name='LIB:EcoCyc11.1'/><ref name='LIB:Riley_2006'/>  
''conserved protein<ref name='LIB:Riley_2006'/>, B0413<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YbaD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, NrdR<ref name='LIB:EcoCyc11.1'/><ref name='LIB:Riley_2006'/> , ECK0407, JW0403, ribX, ybaD, b0413''
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!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
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!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
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[http://porteco.org/AjaxSearch.jsp?searchString=nrdR&s=search PortEco search(nrdR)]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_dna.php?gene=nrdR&loc=MG1655:432226..432675,W3110:432226..432675,DH10B:371557..372006,BW2952:334985..335434 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=334985&end=335434&gene=nrdR&aa=mhcpfcfavdtkvidsrlvgegssvrrrrqclvcnerfttfevaelvmprvvksndvrepfneeklrsgmlralekrpvssddvemainhiksqlratgerevpskmignlvmeqlkkldkvayirfasvyrsfedikefgeeiarled Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=nrdR+AND+escherichia+coli Pubmed(nrdR)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/search?q=nrdR Textpresso(nrdR)]
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=nrdR&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11320]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001291&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=nrdR&loc=MG1655%3A432226..432675,W3110%3A432226..432675,DH10B%3A371557..372006,BW2952%3A334985..335434]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=334985&end=335434&gene=nrdR&aa=mhcpfcfavdtkvidsrlvgegssvrrrrqclvcnerfttfevaelvmprvvksndvrepfneeklrsgmlralekrpvssddvemainhiksqlratgerevpskmignlvmeqlkkldkvayirfasvyrsfedikefgeeiarled]]&nbsp;&nbsp; [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=nrdR+AND+escherichia+coli]]&nbsp;&nbsp; [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=nrdR]]&nbsp;&nbsp;


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Latest revision as of 21:47, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

nrdR

Gene Synonym(s)

ybaD, ECK0407, b0413, JW0403[1][2], JW0403, ribX

Product Desc.

conserved protein[3][2]

Nrd regulon repressor[4]

Product Synonyms(s)

conserved protein[1], B0413[3][1], YbaD[3][1], NrdR[2][1] , ECK0407, JW0403, ribX, ybaD, b0413

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ybaD[3]

Regulation/Activity
Quick Links



        

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Notes

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NrdR has been shown to regulate all three Nrd systems and to bind to the predicted NrdR binding sites (Torrents, 2007). Homologous to S. coelicolor NrdR (Borovok, 2004). Predicted binding sites has been reported for the nrdAB, nrdDG, and nrdHIEF operons (Rodionova, 2005). This corresponds to putative TF Binding SIte Cluster E581 for nrdD and nrdA (Qin, 2003). Binds TrxA (Kumar, 2004). First gene in putative nrdR-ribDE-nusB operon. Also refered to as nrdR in an unpublished comparative analysis (Borovok, 2005, in GenBank AM076828).[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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