cmoA:Quickview: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older edit
touch QV table
touch
 
(2 intermediate revisions by the same user not shown)
Line 23: Line 23:
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*  
*  
****************************************************************************************** -->{{Quickview_table_help}}
****************************************************************************************** -->
{|  id="F49aee21b7c9f7"  class=" tableEdit New_Quickview_Table"   
{|  id="F49aee21b7c9f7"  class=" tableEdit New_Quickview_Table"   


Line 33: Line 33:
!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
||
||
''yecO, ECK1871, b1870, JW1859''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/>
''yecO, ECK1871, b1870, JW1859''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/>, JW1859''
|-
|-
!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
Line 43: Line 43:
!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
||
||
predicted methyltransferase<ref name='LIB:Riley_2006'/>, YecO<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B1870<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CmoA<ref name='LIB:EcoCyc11.1'/><ref name='LIB:Riley_2006'/>, CmoB<ref name='LIB:EcoCyc11.1'/><ref name='LIB:Riley_2006'/>  
''predicted methyltransferase<ref name='LIB:Riley_2006'/>, YecO<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B1870<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CmoA<ref name='LIB:EcoCyc11.1'/><ref name='LIB:Riley_2006'/>, CmoB<ref name='LIB:EcoCyc11.1'/><ref name='LIB:Riley_2006'/> , ECK1871, JW1859, yecO, b1870''
|-
|-
!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
Line 63: Line 63:
!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
||
||
[http://porteco.org/AjaxSearch.jsp?searchString=cmoA&s=search PortEco search(cmoA)]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_dna.php?gene=cmoA&loc=MG1655:1950726..1951469,W3110:1954416..1955159,REL606:1931472..1932215,BW2952:1842785..1843528 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1842785&end=1843528&gene=cmoA&aa=mshrdtlfsapiarlgdwtfdervaevfpdmiqrsvpgysniismigmlaerfvqpgtqvydlgcslgaatlsvrrnihhdnckiiaidnspamiercrrhidaykaptpvdviegdirdiaienasmvvlnftlqflepserqalldkiyqglnpggalvlsekfsfedakvgellfnmhhdfkrangyseleisqkrsmlenvmltdsvethkarlhnagfehselwfqcfnfgslvalkaedaa Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=cmoA+AND+escherichia+coli Pubmed(cmoA)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/search?q=cmoA Textpresso(cmoA)]
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=cmoA&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7020]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003607&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=cmoA&loc=MG1655%3A1950726..1951469,W3110%3A1954416..1955159,REL606%3A1931472..1932215,BW2952%3A1842785..1843528]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1842785&end=1843528&gene=cmoA&aa=mshrdtlfsapiarlgdwtfdervaevfpdmiqrsvpgysniismigmlaerfvqpgtqvydlgcslgaatlsvrrnihhdnckiiaidnspamiercrrhidaykaptpvdviegdirdiaienasmvvlnftlqflepserqalldkiyqglnpggalvlsekfsfedakvgellfnmhhdfkrangyseleisqkrsmlenvmltdsvethkarlhnagfehselwfqcfnfgslvalkaedaa]]&nbsp;&nbsp; [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=cmoA+AND+escherichia+coli]]&nbsp;&nbsp; [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=cmoA]]&nbsp;&nbsp;


|- class="tableEdit_footer"  
|- class="tableEdit_footer"  

Latest revision as of 21:52, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

cmoA

Gene Synonym(s)

yecO, ECK1871, b1870, JW1859[1][2], JW1859

Product Desc.

putative methyltransferase[3]; predicted methyltransferase[2]

Probable tRNA(mcmo5U34)methyltransferase, SAM-dependent[4]

Product Synonyms(s)

predicted methyltransferase[1], YecO[3][1], B1870[3][1], CmoA[2][1], CmoB[2][1] , ECK1871, JW1859, yecO, b1870

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): yecN[3]

Regulation/Activity
Quick Links



        

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


CmoA catalyzes an intermediate step(s) in tRNA(cmo5U34) and tRNA(mcmo5U34) synthesis that forms uridine-5-oxyacetic acid (cmo5U) and uridine-5-oxyacetic acid methyl ester (mcmo5U) in tRNA. The cmoA ortholog is functionally characterized in S. typhimurium. YecO is paralogous to YgdE and FtsJ. otherPDB (H. influenzae): 1IM8. Modeling of 1IM8 suggests substrate might be a benzoic acid derivative, possibly consistent with a chorismic acid requirement for the synthesis of cmo(5)U34.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=cmoA:Quickview&oldid=1397524"