ydeR:Quickview: Difference between revisions

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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK1496, b1503, JW1497''<ref name='LIB:Riley_2006'/>
''ECK1496, b1503, JW1497''<ref name='LIB:Riley_2006'/>, JW1497''
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!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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predicted fimbrial-like adhesin protein<ref name='LIB:Riley_2006'/>, B1503<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YdeR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''predicted fimbrial-like adhesin protein<ref name='LIB:Riley_2006'/>, B1503<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YdeR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK1496, JW1497, b1503''
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!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
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!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=ydeR&loc=MG1655:1586320..1585817,W3110:1590010..1589507,DH10B:1676915..1676412,REL606:1562247..1561744,BW2952:1477876..1478379 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1477876&end=1478379&gene=ydeR&aa=mkrlhkrfllatfcalftatlqaadvtitvngrvvakpctiqtkeanvnlgdlytrnlqqpgsasgwhnitlsltdcpvetsavtaivtgstdntgyyknegtaeniqielrddqdaalkngdsktvivdeitrnaqfplkaraitvngnasqgtiealinviytwq Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ydeR+AND+escherichia+coli Pubmed(ydeR)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/search?q=ydeR Textpresso(ydeR)]
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=ydeR&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6793]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003382&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=ydeR&loc=MG1655%3A1586320..1585817,W3110%3A1590010..1589507,DH10B%3A1676915..1676412,REL606%3A1562247..1561744,BW2952%3A1477876..1478379]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1477876&end=1478379&gene=ydeR&aa=mkrlhkrfllatfcalftatlqaadvtitvngrvvakpctiqtkeanvnlgdlytrnlqqpgsasgwhnitlsltdcpvetsavtaivtgstdntgyyknegtaeniqielrddqdaalkngdsktvivdeitrnaqfplkaraitvngnasqgtiealinviytwq]]&nbsp;&nbsp; [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ydeR+AND+escherichia+coli]]&nbsp;&nbsp; [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=ydeR]]&nbsp;&nbsp;


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Latest revision as of 21:43, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

ydeR

Gene Synonym(s)

ECK1496, b1503, JW1497[1], JW1497

Product Desc.

putative fimbrial-like protein[2][3]

Function unknown, FimA homolog[4]

Product Synonyms(s)

predicted fimbrial-like adhesin protein[1], B1503[2][1], YdeR[2][1] , ECK1496, JW1497, b1503

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ydeR[2]

Regulation/Activity
Quick Links



        

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Notes

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One of 25 FimA homologs in EcoGene. First 24 aa are predicted to be a type I signal peptide.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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