ycgF:Quickview: Difference between revisions

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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK1150, b1163, JW1150''<ref name='LIB:Riley_2006'/>
''ECK1150, b1163, JW1150''<ref name='LIB:Riley_2006'/>, JW1150''
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!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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predicted FAD-binding phosphodiesterase<ref name='LIB:Riley_2006'/>, B1163<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YcgF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Blrp<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''predicted FAD-binding phosphodiesterase<ref name='LIB:Riley_2006'/>, B1163<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YcgF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Blrp<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK1150, JW1150, b1163''
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!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
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!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=ycgF&loc=MG1655:1214698..1213487,W3110:1217052..1215841,DH10B:1254939..1253728,REL606:1215636..1214425,BW2952:1102208..1103419 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1102208&end=1103419&gene=ycgF&aa=mlttliyrshirddepvkkieemvsianrrnmqsdvtgillfngshffqllegpeeqvkmiyraicqdprhynivellcdyaparrfgkagmelfdlrlherddvlqavfdkgtskfqltyddralqffrtfvlateqstyfeipaedswlfiadgsdkeldscalsptindhfafhpivdplsrriiafeaivqknedspsaiavgqrkdgeiytadlkskalaftmahalelgdkmisinllpmtlvnepdavsfllneikanalvpeqiiveftesevisrfdefaeaikslkaagisvaidhfgagfagllllsrfqpdrikisqelitnvhksgprqaiiqaiikcctsleiqvsamgvatpeewmwlesagiemfqgdlfakaklngipsiawpekk Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ycgF+AND+escherichia+coli Pubmed(ycgF)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/search?q=ycgF Textpresso(ycgF)]
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=ycgF&s=search]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=ycgF&loc=MG1655%3A1214698..1213487,W3110%3A1217052..1215841,DH10B%3A1254939..1253728,REL606%3A1215636..1214425,BW2952%3A1102208..1103419]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1102208&end=1103419&gene=ycgF&aa=mlttliyrshirddepvkkieemvsianrrnmqsdvtgillfngshffqllegpeeqvkmiyraicqdprhynivellcdyaparrfgkagmelfdlrlherddvlqavfdkgtskfqltyddralqffrtfvlateqstyfeipaedswlfiadgsdkeldscalsptindhfafhpivdplsrriiafeaivqknedspsaiavgqrkdgeiytadlkskalaftmahalelgdkmisinllpmtlvnepdavsfllneikanalvpeqiiveftesevisrfdefaeaikslkaagisvaidhfgagfagllllsrfqpdrikisqelitnvhksgprqaiiqaiikcctsleiqvsamgvatpeewmwlesagiemfqgdlfakaklngipsiawpekk]]&nbsp;&nbsp; [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ycgF+AND+escherichia+coli]]&nbsp;&nbsp; [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=ycgF]]&nbsp;&nbsp;


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Latest revision as of 21:43, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

ycgF

Gene Synonym(s)

ECK1150, b1163, JW1150[1], JW1150

Product Desc.

predicted FAD-binding phosphodiesterase[2][3]

Putative cyclic-di-GMP phosphodiesterase, function unknown; cold shock gene, binds FAD[4]

Product Synonyms(s)

predicted FAD-binding phosphodiesterase[1], B1163[2][1], YcgF[2][1], Blrp[2][1] , ECK1150, JW1150, b1163

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ycgF[2]

Regulation/Activity
Quick Links



        

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See Help:Quickview for help with entering information in the Quickview table.

Notes

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The cold-inducibility of ycgF is dependent on the presence of the pnp gene. YcgF has an N-terminal blue light-responsive FAD-binding BLUF domain, and a C-terminal cyclic-di-GMP phosphodiesterase EAL domain.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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