thiM:Quickview: Difference between revisions
Jump to navigation
Jump to search
touch QV table |
touch |
||
| (3 intermediate revisions by the same user not shown) | |||
| Line 23: | Line 23: | ||
* ** PLEASE DON'T EDIT THIS TABLE DIRECTLY. Use the edit table link under the table. ** | * ** PLEASE DON'T EDIT THIS TABLE DIRECTLY. Use the edit table link under the table. ** | ||
* | * | ||
****************************************************************************************** --> | ****************************************************************************************** --> | ||
{| id="C49b0268c8b9d5" class=" tableEdit New_Quickview_Table" | {| id="C49b0268c8b9d5" class=" tableEdit New_Quickview_Table" | ||
| Line 33: | Line 33: | ||
!align=left {{table_heading_style}} |Gene Synonym(s) | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
|| | || | ||
''ECK2097, b2104, JW2091''<ref name='LIB:Riley_2006'/> | ''ECK2097, b2104, JW2091''<ref name='LIB:Riley_2006'/>, JW2091'' | ||
|- | |- | ||
!align=left {{table_heading_style}} |Product Desc. | !align=left {{table_heading_style}} |Product Desc. | ||
| Line 43: | Line 43: | ||
!align=left {{table_heading_style}} |Product Synonyms(s) | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
|| | || | ||
hydoxyethylthiazole kinase<ref name='LIB:Riley_2006'/>, B2104<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ThiM<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, 4-methyl-5-(β-hydroxyethyl)thiazole kinase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ATP:4-methyl-5-(2-hydroxyethyl)-thiazole 2-phosphotransferase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, THZ kinase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> | ''hydoxyethylthiazole kinase<ref name='LIB:Riley_2006'/>, B2104<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ThiM<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, 4-methyl-5-(β-hydroxyethyl)thiazole kinase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ATP:4-methyl-5-(2-hydroxyethyl)-thiazole 2-phosphotransferase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, THZ kinase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK2097, JW2091, b2104'' | ||
|- | |- | ||
!align=left {{table_heading_style}} |Function from GO | !align=left {{table_heading_style}} |Function from GO | ||
| Line 63: | Line 63: | ||
!align=left {{table_heading_style}} |Quick Links | !align=left {{table_heading_style}} |Quick Links | ||
|| | || | ||
[http://ecoliwiki.net/tools/display_dna.php?gene=thiM&loc=MG1655 | [[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=thiM&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=M007]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120004467&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=thiM&loc=MG1655%3A2183323..2182535,W3110%3A2188635..2187847,REL606%3A2139430..2138642,DH10B%3A2274331..2273543,BW2952%3A2075018..2075806]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2075018&end=2075806&gene=thiM&aa=mqvdllgsaqsahalhlfhqhsplvhcmtndvvqtftantllalgaspamvieteeasqfaaiasallinvgtltqpraqamraaveqakssqtpwtldpvavgaldyrrhfchellsfkpaairgnaseimalagianggrgvdttdaaanaipaaqtlaretgaivvvtgemdyvtdghriigihggdplmtkvvgtgcalsavvaaccalpgdtlenvasachwmkqageravarsegpgsfvphfldalwqltqevqa]] [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=thiM+AND+escherichia+coli]] [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=thiM]] | ||
|- class="tableEdit_footer" | |- class="tableEdit_footer" | ||
Latest revision as of 21:45, 27 May 2013
{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>
| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
| Standard Name |
thiM |
|---|---|
| Gene Synonym(s) |
ECK2097, b2104, JW2091[1], JW2091 |
| Product Desc. |
hydroxyethylthiazole kinase[2][3] Hydroxyethylthiazole kinase[4] |
| Product Synonyms(s) |
hydoxyethylthiazole kinase[1], B2104[2][1], ThiM[2][1], 4-methyl-5-(β-hydroxyethyl)thiazole kinase[2][1], ATP:4-methyl-5-(2-hydroxyethyl)-thiazole 2-phosphotransferase[2][1], THZ kinase[2][1] , ECK2097, JW2091, b2104 |
| Function from GO |
<GO_nr /> |
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links |
|
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
thiMD operon expression is controlled by a thiamine pyrophosphate (TPP) responsive riboswitch in the 5' UTR. The thiM riboswitch is the target for the antibiotic pyrithiamine. The PDB links are to the structures of various thiM riboswitch/small molecule complexes: 2GDI, TPP; 2HOJ, TPP/Mn2+; 2HOK, TPP/Ca2+; 2HOL, TPP/Ba2+; 2HOM,TMP; 2HOO, BTP; 2HOP, PT (Serganov, 2006; Edwards, 2006).[4]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.