gcvA:Quickview: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older edit
touch QV table
touch
 
(3 intermediate revisions by the same user not shown)
Line 23: Line 23:
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*  
*  
****************************************************************************************** -->{{Quickview_table_help}}
****************************************************************************************** -->
{|  id="S49aee7092ae4f"  class=" tableEdit New_Quickview_Table"   
{|  id="S49aee7092ae4f"  class=" tableEdit New_Quickview_Table"   


Line 33: Line 33:
!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
||
||
''ECK2803, b2808, JW2779''<ref name='LIB:Riley_2006'/>
''ECK2803, b2808, JW2779''<ref name='LIB:Riley_2006'/>, JW2779''
|-
|-
!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
Line 43: Line 43:
!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
||
||
DNA-binding transcriptional dual regulator<ref name='LIB:Riley_2006'/>, B2808<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, GcvA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, positive regulator of gcv operon<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
''DNA-binding transcriptional dual regulator<ref name='LIB:Riley_2006'/>, B2808<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, GcvA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, positive regulator of gcv operon<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ECK2803, JW2779, b2808''
|-
|-
!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
Line 63: Line 63:
!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
||
||
[http://ecoliwiki.net/tools/display_dna.php?gene=gcvA&loc=MG1655:2940589..2939672,W3110:2941223..2940306,REL606:2837186..2836269,DH10B:3034467..3033550,BW2952:2826820..2827737 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2826820&end=2827737&gene=gcvA&aa=mskrlpplnalrvfdaaarhlsftraaeelfvtqaavshqiksledflglklfrrrnrslllteegqsyfldikeifsqlteatrklqarsakgaltvsllpsfaihwlvprlssfnsaypgidvriqavdrqedkladdvdvaifygrgnwpglrveklyaeyllpvcspllltgekplktpedlakhtllhdasrrdwqtytrqlglnhinvqqgpifshsamvlqaaihgqgvalannvmaqseieagrlvcpfndvlvsknafylvchdsqaelgkiaafrqwilakaaaeqekfrfryeq Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=gcvA+AND+escherichia+coli Pubmed(gcvA)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/search?q=gcvA Textpresso(gcvA)]
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=gcvA&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11795]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001729&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=gcvA&loc=MG1655%3A2940589..2939672,W3110%3A2941223..2940306,REL606%3A2837186..2836269,DH10B%3A3034467..3033550,BW2952%3A2826820..2827737]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2826820&end=2827737&gene=gcvA&aa=mskrlpplnalrvfdaaarhlsftraaeelfvtqaavshqiksledflglklfrrrnrslllteegqsyfldikeifsqlteatrklqarsakgaltvsllpsfaihwlvprlssfnsaypgidvriqavdrqedkladdvdvaifygrgnwpglrveklyaeyllpvcspllltgekplktpedlakhtllhdasrrdwqtytrqlglnhinvqqgpifshsamvlqaaihgqgvalannvmaqseieagrlvcpfndvlvsknafylvchdsqaelgkiaafrqwilakaaaeqekfrfryeq]]&nbsp;&nbsp; [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=gcvA+AND+escherichia+coli]]&nbsp;&nbsp; [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=gcvA]]&nbsp;&nbsp;


|- class="tableEdit_footer"  
|- class="tableEdit_footer"  

Latest revision as of 21:50, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

gcvA

Gene Synonym(s)

ECK2803, b2808, JW2779[1], JW2779

Product Desc.

GcvA transcriptional dual regulator[2][3]

Glycine-responsive activator of gcv operon; acts as repressor in absence of glycine, probably antagonized by Crp; repression function enhanced by exogenous purine addition; repressor function requires GcvR interaction[4]

Product Synonyms(s)

DNA-binding transcriptional dual regulator[1], B2808[2][1], GcvA[2][1], positive regulator of gcv operon[2][1], ECK2803, JW2779, b2808

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): gcvA[2], OP00233

Regulation/Activity
Quick Links



        

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


Glycine co-activator binds to GcvR and disrupts GcvA-GcvR interaction.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=gcvA:Quickview&oldid=1397026"