borD:Quickview: Difference between revisions

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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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DLP12 prophage; predicted lipoprotein<ref name='LIB:Riley_2006'/>, B0557<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Iss<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, BorD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Bor<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YbcU<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, VboR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''DLP12 prophage; predicted lipoprotein<ref name='LIB:Riley_2006'/>, B0557<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Iss<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, BorD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Bor<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YbcU<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, VboR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0549, iss, JW0546, ybcU, b0557''
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!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
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!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=borD&loc=MG1655:578116..577823,W3110:578116..577823,DH10B:517448..517155,DH10B:630708..630415,REL606:550069..550362,BW2952:4152060..4152353,BW2952:480583..480876 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=480583&end=480876&gene=borD&aa=mkkmllatalallitgcaqqtftvqnkqtavapketithhffvsgigqkktvdaakicggaenvvktetqqtfvngllgfitlgiytplearvycsk Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=borD+AND+escherichia+coli Pubmed(borD)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/search?q=borD Textpresso(borD)]
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=borD&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6312]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120002920&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=borD&loc=MG1655%3A578116..577823,W3110%3A578116..577823,DH10B%3A517448..517155,DH10B%3A630708..630415,REL606%3A550069..550362,BW2952%3A4152060..4152353,BW2952%3A480583..480876]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=480583&end=480876&gene=borD&aa=mkkmllatalallitgcaqqtftvqnkqtavapketithhffvsgigqkktvdaakicggaenvvktetqqtfvngllgfitlgiytplearvycsk]]&nbsp;&nbsp; [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=borD+AND+escherichia+coli]]&nbsp;&nbsp; [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=borD]]&nbsp;&nbsp;


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Latest revision as of 21:52, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

borD

Gene Synonym(s)

ECK0549, b0557, JW0546, ybcU, bor, iss, vboR[1]

Product Desc.

bacteriophage lambda Bor protein homolog[2][3]

Lipoprotein in DLP12 prophage; possibly involved in bacterial virulence[4]

Product Synonyms(s)

DLP12 prophage; predicted lipoprotein[1], B0557[2][1], Iss[2][1], BorD[2][1], Bor[2][1], YbcU[2][1], VboR[2][1] , ECK0549, iss, JW0546, ybcU, b0557

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): borD[2]

Regulation/Activity
Quick Links



        

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Notes

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Mg(2+) stimulon-PhoPQ regulon. Overexpression causes abnormal biofilm architecture. Homolog of bacteriophage lambda bor protein. First 16 aa are a type II signal peptide.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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