hdeA:Quickview: Difference between revisions

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{{Tab On|Quickview|hdeA}}{{Tab|Gene|hdeA}}{{Tab|Gene Product(s)|hdeA}}{{Tab|Expression|hdeA}}{{Tab|Evolution|hdeA}}{{Tab|On One Page|hdeA}}{{TabsBottom}}
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[hdeA:Gene|''hdeA]]'' (synonyms: ''ECK3494, b3510, JW3478, yhhC, yhiB'')<ref name='LIB:Riley_2006'/>
''hdeA''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[hdeA:Gene_Product(s)|HdeA product]]<ref name='LIB:Riley_2006'/>: stress response protein acid-resistance protein<ref name='LIB:Riley_2006'/>, B3510<ref name='LIB:EcoCyc10.6'/>, YhhC<ref name='LIB:EcoCyc10.6'/>, YhiB<ref name='LIB:EcoCyc10.6'/>, HdeA<ref name='LIB:EcoCyc10.6'/>, [[:Category:Complex:HdeA dimer, inactive form of acid-resistance protein|HdeA dimer, inactive form of acid-resistance protein]]<ref name='LIB:EcoCyc11.1'/>
''ECK3494, b3510, JW3478, yhhC, yhiB''<ref name='LIB:Riley_2006'/>, yhiB''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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acid-resistance protein, possible chaperone<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
acid-resistance protein, possible chaperone<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;


Component of [[:Category:Complex:HdeA dimer, inactive form of acid-resistance protein|HdeA dimer, inactive form of acid-resistance protein]]<ref name='LIB:EcoCyc11.1'/>


Periplasmic chaperone of acid-denatured proteins; H-NS repressed<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''stress response protein acid-resistance protein<ref name='LIB:Riley_2006'/>, B3510<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YhhC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YhiB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HdeA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK3494, JW3478, yhhC, yhiB, b3510''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:txn_units:hdeAB|hdeAB]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:hdeAB|hdeAB]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=hdeA&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11398]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001364&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=hdeA&loc=MG1655%3A3654763..3654431,W3110%3A3983675..3984007,DH10B%3A3752508..3752176,REL606%3A3586231..3585899,BW2952%3A3542925..3543257]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3542925&end=3543257&gene=hdeA&aa=mkkvlgvilggllllpvvsnaadaqkaadnkkpvnswtcedflavdesfqptavgfaealnnkdkpedavldvqgiatvtpaivqactqdkqanfkdkvkgewdkikkdm]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=hdeA+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=hdeA]]&nbsp;&nbsp;
 
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==Notes==
===Notes===
{{BacktoTop}}
 
Overexpression causes abnormal biofilm architecture. Acid-inducible and important for acid survival. HdeA and HdeB are both involved in periplasmic protein solubilization at pH 3; HdeA is involved in periplasmic protein solubilization at pH 2 (Kern, 2006).<ref name='LIB:EcoGene'/>
 




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==References==
==References==
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Latest revision as of 21:49, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

hdeA

Gene Synonym(s)

ECK3494, b3510, JW3478, yhhC, yhiB[1], yhiB

Product Desc.

acid-resistance protein, possible chaperone[2][3];

Component of HdeA dimer, inactive form of acid-resistance protein[3]

Periplasmic chaperone of acid-denatured proteins; H-NS repressed[4]

Product Synonyms(s)

stress response protein acid-resistance protein[1], B3510[2][1], YhhC[2][1], YhiB[2][1], HdeA[2][1] , ECK3494, JW3478, yhhC, yhiB, b3510

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): hdeAB[2]

Regulation/Activity
Quick Links



        

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Notes

[back to top]


Overexpression causes abnormal biofilm architecture. Acid-inducible and important for acid survival. HdeA and HdeB are both involved in periplasmic protein solubilization at pH 3; HdeA is involved in periplasmic protein solubilization at pH 2 (Kern, 2006).[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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