nikB:Quickview: Difference between revisions

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{{Tab On|Quickview|nikB}}{{Tab|Gene|nikB}}{{Tab|Gene Product(s)|nikB}}{{Tab|Expression|nikB}}{{Tab|Evolution|nikB}}{{Tab|On One Page|nikB}}{{TabsBottom}}
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[nikB:Gene|''nikB]]'' (synonyms: ''ECK3461, b3477, JW3442, hydC, hydD, nikA-'')<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
''nikB''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[nikB:Gene_Product(s)|NikB product]]<ref name='LIB:Riley_2006'/>: nickel transporter subunit<ref name='LIB:Riley_2006'/>, membrane component of ABC superfamily<ref name='LIB:Riley_2006'/>, B3477<ref name='LIB:EcoCyc10.6'/>, HydC<ref name='LIB:EcoCyc10.6'/>, HydD<ref name='LIB:EcoCyc10.6'/>, NikB<ref name='LIB:EcoCyc10.6'/>, [[:Category:Complex:nickel ABC transporter|nickel ABC transporter]]<ref name='LIB:EcoCyc10.6'/>
''ECK3461, b3477, JW3442, hydC, hydD, nikA-''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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NikB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
NikB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;


Component of [[:Category:Complex:nickel ABC transporter|nickel ABC transporter]]<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


Nickel transport system permease<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''nickel transporter subunit<ref name='LIB:Riley_2006'/>, membrane component of ABC superfamily<ref name='LIB:Riley_2006'/>, B3477<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HydC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, HydD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, NikB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK3461, hydC, hydD, JW3442, b3477''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:txn_units:nikABCDER|nikABCDER]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:nikABCDER|nikABCDER]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=nikB&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12076]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001982&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=nikB&loc=MG1655%3A3613264..3614208,W3110%3A4025174..4024230,REL606%3A3545929..3546873,DH10B%3A3711009..3711953,BW2952%3A3501758..3502702]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3501758&end=3502702&gene=nikB&aa=mlryvlrrflllipmvlaasviiflmlrlgtgdpaldylrlsnlpptpemlastrtmlgldqplyvqygtwlwkalhldfgisfasqrpvlddmlnflpatlelagaalvlilltsvplgiwaarhrdrlpdfavrfiaflgvsmpnfwlafllvmafsvylqwlpamgyggwqhiilpavsiafmslainarllrasmldvagqrhvtwarlrglndkqterrhilrnaslpmitavgmhigeliggtmiienifawpgvgryavsaifnrdypviqcftlmmvvvfvvcnlivdllnaaldprirrhegaha]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=nikB+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=nikB]]&nbsp;&nbsp;
 
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==Notes==
===Notes===
{{BacktoTop}}
 
Mutants display nickel-remediated formate hydrogen-lyase, hydrogenase, and hydrogenase-related fumarase defects.<ref name='LIB:EcoGene'/>
 




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==References==
==References==
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<references/>
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Latest revision as of 21:47, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

nikB

Gene Synonym(s)

ECK3461, b3477, JW3442, hydC, hydD, nikA-[1][2]

Product Desc.

NikB[2][3];

Component of nickel ABC transporter[2][3]

Nickel transport system permease[4]

Product Synonyms(s)

nickel transporter subunit[1], membrane component of ABC superfamily[1], B3477[2][1], HydC[2][1], HydD[2][1], NikB[2][1] , ECK3461, hydC, hydD, JW3442, b3477

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): nikABCDER[2]

Regulation/Activity
Quick Links



        

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Notes

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Mutants display nickel-remediated formate hydrogen-lyase, hydrogenase, and hydrogenase-related fumarase defects.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 2.7 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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