truB:Evolution: Difference between revisions

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!|Organism!!Homologs (Statistics)!!Comments
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF01509 PF01509  TruB family pseudouridylate synthase (N terminal domain)]
[http://pfam.janelia.org/family/PF01509 PF01509  TruB family pseudouridylate synthase (N terminal domain)]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF09157 PF09157  Pseudouridine synthase II TruB, C-terminal]
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[[EcoCyc]]
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EcoCyc:EG11177
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG11177
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120001159
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB1164
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0010404
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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Latest revision as of 08:35, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000017710 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT5G14460 (score: 1.000; bootstrap: 97%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000017209 (score: 1.000; bootstrap: 85%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00037760 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00010478 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000017180 (score: 1.000; bootstrap: 91%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000009497 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-050828-5 (score: 1.000; bootstrap: 77%)
  • ZDB-CDNA-050828-8 (score: 1.000; bootstrap: 77%)
  • ZDB-GENE-031118-120 (score: 0.968)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0204297 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0023184 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000014785 (score: 1.000; bootstrap: 87%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000298746 (score: 1.000; bootstrap: 91%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000002541 (score: 1.000; bootstrap: 91%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000012096 (score: 1.000; bootstrap: 90%)

From Inparanoid:20070104

Mus musculus

  • MGI:1919383 (score: 1.000; bootstrap: 89%)

From Inparanoid:20070104

Oryza gramene

  • Q94HL3 (score: 1.000; bootstrap: 97%)
  • Q65X25 (score: 1.000; bootstrap: 97%)
  • Q84ZW4 (score: 0.912)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000005235 (score: 1.000; bootstrap: 89%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000023309 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YLR175W (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC29A44c (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000140014 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000051364 (score: 1.000; bootstrap: 90%)

From Inparanoid:20070104

Shigella flexneri

TRUB

From SHIGELLACYC

E. coli O157

TRUB

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Panther (EcoliWiki Page)

PTHR13767:SF2

Superfamily (EcoliWiki Page)

SUPERFAMILY:55120

Superfamily (EcoliWiki Page)

SUPERFAMILY:88697

Pfam (EcoliWiki Page)

PF01509 TruB family pseudouridylate synthase (N terminal domain)

Pfam (EcoliWiki Page)

PF09157 Pseudouridine synthase II TruB, C-terminal

EcoCyc

EcoCyc:EG11177

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11177

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001159

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1164

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0010404

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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