yghU:Evolution: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older edit
deleting Pfam from accessions table on evolution pages
touch
 
(3 intermediate revisions by the same user not shown)
Line 29: Line 29:
*  
*  
****************************************************************************************** -->{{Evolution_homologs_table_help}}
****************************************************************************************** -->{{Evolution_homologs_table_help}}
{|   id="L46abf09d57375"  class=" tableEdit Evolution_homologs_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="L46abf09d57375"  class=" tableEdit Evolution_homologs_table"   
|- {{table heading style}}
|- {{table heading style}}
!|Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
Line 188: Line 188:
*  
*  
****************************************************************************************** -->{{Gene_accessions_help}}
****************************************************************************************** -->{{Gene_accessions_help}}
{|   id="R46abf0a9887b6"  class=" tableEdit Gene_accessions_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="R46abf0a9887b6"  class=" tableEdit Gene_accessions_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-
|
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
[http://pfam.janelia.org/family/PF00043 PF00043  Glutathione S-transferase, C-terminal domain]
|
|-
|
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
[http://pfam.janelia.org/family/PF02798 PF02798  Glutathione S-transferase, N-terminal domain]
|
|-  
|-  
|
|
Line 205: Line 219:
|
|
   
   
|-
|
[[EcoCyc]]
|
EcoCyc:G7553
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EcoGene]]
|
EcoGene:EG13005
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[RegulonDB]]
|
RegulonDB:ECK120004113
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EchoBASE]]
|
EchoBASE:EB2827
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[ASAP]]
|
ASAP:ABE-0009812
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


|- class="tableEdit_footer"  
|- class="tableEdit_footer"  
Line 224: Line 273:
*  
*  
****************************************************************************************** -->
****************************************************************************************** -->
{|   id="B46a831fd06185"  class=" tableEdit Links_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="B46a831fd06185"  class=" tableEdit Links_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Name!!URL!!Comments
!|Name!!URL!!Comments

Latest revision as of 08:35, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000000321 (score: 1.000; bootstrap: 100%)
  • ENSANGP00000011261 (score: 0.266)
  • ENSANGP00000013141 (score: 0.243)
  • ENSANGP00000011752 (score: 0.230)
  • ENSANGP00000023588 (score: 0.217)
  • ENSANGP00000028492 (score: 0.214)
  • ENSANGP00000013058 (score: 0.209)
  • ENSANGP00000013059 (score: 0.167)
  • ENSANGP00000011770 (score: 0.151)
  • ENSANGP00000015332 (score: 0.149)
  • ENSANGP00000012678 (score: 0.149)
  • ENSANGP00000000087 (score: 0.138)
  • ENSANGP00000028067 (score: 0.131)
  • ENSANGP00000018720 (score: 0.081)
  • ENSANGP00000024065 (score: 0.057)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000020682 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000020699 (score: 0.432)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040426-1491 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-2425 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-2551 (score: 0.334)
  • ZDB-GENE-040426-1617 (score: 0.334)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0215230 (score: 1.000; bootstrap: 78%)
  • DDB0167587 (score: 0.866)
  • DDB0203252 (score: 0.404)
  • DDB0168578 (score: 0.091)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0010039 (score: 1.000; bootstrap: 100%)
  • FBgn0010041 (score: 0.627)
  • FBgn0010038 (score: 0.621)
  • FBgn0010040 (score: 0.600)
  • FBgn0001149 (score: 0.555)
  • FBgn0042206 (score: 0.552)
  • FBgn0010043 (score: 0.525)
  • FBgn0010042 (score: 0.504)
  • FBgn0010044 (score: 0.504)
  • FBgn0038020 (score: 0.427)
  • FBgn0038029 (score: 0.260)
  • FBgn0053546 (score: 0.110)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA14986-PA (score: 1.000; bootstrap: 100%)
  • GA10031-PA (score: 0.658)
  • GA18009-PA (score: 0.554)
  • GA10065-PA (score: 0.549)
  • GA18171-PA (score: 0.500)
  • GA14590-PA (score: 0.299)
  • GA18357-PA (score: 0.054)

From Inparanoid:20070104

Oryza gramene

  • Q8H8D6 (score: 1.000; bootstrap: 76%)
  • Q6QN20 (score: 1.000; bootstrap: 73%)
  • Q9FWE3 (score: 0.586)
  • Q7XCK0 (score: 0.586)
  • Q9FQC5 (score: 0.546)
  • Q8H8D8 (score: 0.235)
  • Q9FQC7 (score: 0.231)
  • Q9FQD0 (score: 0.227)
  • Q9FQC6 (score: 0.225)
  • Q8H8E0 (score: 0.195)
  • Q9FUD8 (score: 0.193)
  • Q8H8D9 (score: 0.176)
  • Q6ZJH9 (score: 0.132)
  • Q9FQC3 (score: 0.109)
  • Q7XXN1 (score: 0.103)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YNL229C (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPCC9657c (score: 1.000; bootstrap: 90%)
  • SPCC1919c (score: 0.716)

From Inparanoid:20070104

Shigella flexneri

S3237

From SHIGELLACYC

E. coli O157

Z4343

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00043 Glutathione S-transferase, C-terminal domain

Pfam (EcoliWiki Page)

PF02798 Glutathione S-transferase, N-terminal domain

Superfamily (EcoliWiki Page)

SUPERFAMILY:47616

Superfamily (EcoliWiki Page)

SUPERFAMILY:52833

EcoCyc

EcoCyc:G7553

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13005

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004113

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2827

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0009812

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

[back to top]



References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=yghU:Evolution&oldid=1391132"