yahK:Evolution: Difference between revisions

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deleting Pfam from accessions table on evolution pages
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!|Organism!!Homologs (Statistics)!!Comments
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!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00107 PF00107  Zinc-binding dehydrogenase]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF08240 PF08240  Alcohol dehydrogenase GroES-like domain]
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[[EcoCyc]]
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EcoCyc:G6190
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG13595
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120002808
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB3364
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0001113
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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Latest revision as of 08:30, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Arabidopsis thaliana

  • AT4G37990 (score: 1.000; bootstrap: 100%)
  • AT4G37980 (score: 0.740)
  • AT4G37970 (score: 0.381)
  • AT4G39330 (score: 0.381)
  • AT2G21890 (score: 0.328)
  • AT2G21730 (score: 0.320)
  • AT4G34230 (score: 0.136)
  • AT3G19450 (score: 0.119)

From Inparanoid:20070104

Oryza gramene

  • Q7XE98 (score: 1.000; bootstrap: 100%)
  • Q8S411 (score: 0.463)
  • Q7F9B4 (score: 0.319)
  • Q6ERW9 (score: 0.218)
  • Q6ERW5 (score: 0.199)
  • Q6ERX1 (score: 0.199)
  • Q7XWU3 (score: 0.169)
  • Q8H809 (score: 0.129)
  • Q8S412 (score: 0.124)
  • Q6ERW7 (score: 0.113)
  • Q8H859 (score: 0.107)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YCR105W (score: 1.000; bootstrap: 99%)
  • YMR318C (score: 0.555)

From Inparanoid:20070104

E. coli O157

YAHK

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00107 Zinc-binding dehydrogenase

Superfamily (EcoliWiki Page)

SUPERFAMILY:50129

Superfamily (EcoliWiki Page)

SUPERFAMILY:51735

Pfam (EcoliWiki Page)

PF08240 Alcohol dehydrogenase GroES-like domain

EcoCyc

EcoCyc:G6190

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13595

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002808

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3364

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0001113

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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