paoC:Evolution: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
deleting Pfam from accessions table on evolution pages
touch
 
(3 intermediate revisions by the same user not shown)
Line 105: Line 105:
*  
*  
****************************************************************************************** -->{{Gene_accessions_help}}
****************************************************************************************** -->{{Gene_accessions_help}}
{|   id="J46ab9dde21bb9"  class=" tableEdit Gene_accessions_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="J46ab9dde21bb9"  class=" tableEdit Gene_accessions_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-
|
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
[http://pfam.janelia.org/family/PF02738 PF02738  Molybdopterin-binding domain of aldehyde dehydrogenase]
|
|-
|
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
[http://pfam.janelia.org/family/PF01315 PF01315  Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain]
|
|-  
|-  
|
|
Line 129: Line 143:
|
|
   
   
|-
|
[[EcoCyc]]
|
EcoCyc:
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EcoGene]]
|
EcoGene:
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[RegulonDB]]
|
RegulonDB:
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EchoBASE]]
|
EchoBASE:
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[ASAP]]
|
ASAP:
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


|- class="tableEdit_footer"  
|- class="tableEdit_footer"  

Latest revision as of 08:30, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Monodelphis domestica

  • ENSMODP00000019349 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000015626 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000015675 (score: 0.597)
  • ENSMODP00000018747 (score: 0.586)
  • ENSMODP00000015728 (score: 0.532)

From Inparanoid:20070104

Mus musculus

  • MGI:98973 (score: 1.000; bootstrap: 100%)
  • MGI:3529596 (score: 1.000; bootstrap: 100%)
  • MGI:1918974 (score: 0.645)
  • MGI:1919122 (score: 0.625)
  • MGI:88035 (score: 0.594)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000009634 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000042328 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000049807 (score: 0.594)
  • ENSRNOP00000021389 (score: 0.557)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00031889001 (score: 1.000; bootstrap: 100%)
  • GSTENP00012569001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

E. coli O157

YAGR

From ECOO157CYC


Do-It-Yourself Web Tools


Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase

Pfam (EcoliWiki Page)

PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain

Panther (EcoliWiki Page)

PTHR11908:SF4

Superfamily (EcoliWiki Page)

SUPERFAMILY:54665

Superfamily (EcoliWiki Page)

SUPERFAMILY:56003

EcoCyc

EcoCyc:

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:

Escherichia coli str. K-12 substr. MG1655


Notes

Links

[back to top]



References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

[back to top]